QVZ: lossy compression of quality values

Lossy compression of quality scores in genomic data

(2014) Rodrigo Cánovas et al.   BIOINFORMATICS

DSRC 2—Industry-oriented compression of FASTQ files

(2014) Łukasz Roguski et al.   BIOINFORMATICS

Sequencing and Assembly of the 22-Gb Loblolly Pine Genome

(2014) A. Zimin et al.   GENETICS

Technology: The $1,000 genome

(2014) Erika Check Hayden   NATURE

Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls

(2014) Justin M Zook et al.   NATURE BIOTECHNOLOGY

Adaptive reference-free compression of sequence quality scores

(2013) L. Janin et al.   BIOINFORMATICS

QualComp: a new lossy compressor for quality scores based on rate distortion theory

(2013) Idoia Ochoa et al.   BMC BIOINFORMATICS

The DNA data deluge

(2013) M. C. Schatz et al.   IEEE SPECTRUM

Compression of FASTQ and SAM Format Sequencing Data

(2013) James K. Bonfield et al.   PLoS One

OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing

(2012) S. Das et al.   BIOINFORMATICS

SCALCE: boosting sequence compression algorithms using locally consistent encoding

(2012) Faraz Hach et al.   BIOINFORMATICS

Transformations for the compression of FASTQ quality scores of next-generation sequencing data

(2011) Raymond Wan et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Deploying whole genome sequencing in clinical practice and public health: Meeting the challenge one bin at a time

(2011) Jonathan S Berg et al.   GENETICS IN MEDICINE

Efficient storage of high throughput DNA sequencing data using reference-based compression

(2011) M. Hsi-Yang Fritz et al.   GENOME RESEARCH

Compressing Genomic Sequence Fragments Using SlimGene

(2011) Christos Kozanitis et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY