QualComp: a new lossy compressor for quality scores based on rate distortion theory

SCALCE: boosting sequence compression algorithms using locally consistent encoding

(2012) Faraz Hach et al.   BIOINFORMATICS

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

(2012) Daniel C. Jones et al.   NUCLEIC ACIDS RESEARCH

The future of DNA sequence archiving

(2012) Guy Cochrane et al.   GigaScience

Compression of DNA sequence reads in FASTQ format

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

Efficient storage of high throughput DNA sequencing data using reference-based compression

(2011) M. Hsi-Yang Fritz et al.   GENOME RESEARCH

A novel compression tool for efficient storage of genome resequencing data

(2011) Congmao Wang et al.   NUCLEIC ACIDS RESEARCH

On the Representability of Complete Genomes by Multiple Competing Finite-Context (Markov) Models

(2011) Armando J. Pinho et al.   PLoS One

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

G-SQZ: compact encoding of genomic sequence and quality data

(2010) W. Tembe et al.   BIOINFORMATICS

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Efficient use of accessibility in microRNA target prediction

(2010) Ray M. Marín et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH