Integrated analysis of high-throughput sequencing data shows abscisic acid-responsive genes and miRNAs in strawberry receptacle fruit ripening

Tobacco TTG2 and ARF8 function concomitantly to control flower colouring by regulating anthocyanin synthesis genes

(2017) P. Li et al.   PLANT BIOLOGY

The WRKY transcription factors in the diploid woodland strawberry Fragaria vesca : Identification and expression analysis under biotic and abiotic stresses

(2016) Wei Wei et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Comparative Analysis of miRNAs and Their Target Transcripts between a Spontaneous Late-Ripening Sweet Orange Mutant and Its Wild-Type Using Small RNA and Degradome Sequencing

(2016) Juxun Wu et al.   Frontiers in Plant Science

Genome-Wide Analysis of the Expression of WRKY Family Genes in Different Developmental Stages of Wild Strawberry (Fragaria vesca) Fruit

(2016) Heying Zhou et al.   PLoS One

RNAi-mediated silencing and overexpression of the FaMYB1 gene and its effect on anthocyanin accumulation in strawberry fruit

(2015) Y. Kadomura-Ishikawa et al.   BIOLOGIA PLANTARUM

Central role ofFaGAMYBin the transition of the strawberry receptacle from development to ripening

(2015) José G. Vallarino et al.   NEW PHYTOLOGIST

Correction

(2015)   PLANT JOURNAL

Novel and Recently Evolved MicroRNA Clusters Regulate ExpansiveF-BOXGene Networks through Phased Small Interfering RNAs in Wild Diploid Strawberry

(2015) Rui Xia et al.   PLANT PHYSIOLOGY

SUCROSE NONFERMENTING1-RELATED PROTEIN KINASE2.6, an Ortholog of OPEN STOMATA1, Is a Negative Regulator of Strawberry Fruit Development and Ripening

(2015) Yu Han et al.   PLANT PHYSIOLOGY

An R2R3-MYB Transcription Factor Regulates Eugenol Production in Ripe Strawberry Fruit Receptacles

(2015) Laura Medina-Puche et al.   PLANT PHYSIOLOGY

Identification, isolation, and expression analysis of heat shock transcription factors in the diploid woodland strawberry Fragaria vesca

(2015) Yang Hu et al.   Frontiers in Plant Science

Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca

(2015) Yuchao Zhang et al.   PLoS One

Negative Feedback Regulation of Auxin Signaling by ATHB8/ACL5–BUD2 Transcription Module

(2014) Simona Baima et al.   Molecular Plant

A Conserved Network of Transcriptional Activators and Repressors Regulates Anthocyanin Pigmentation in Eudicots

(2014) Nick W. Albert et al.   PLANT CELL

The Non-JAZ TIFY Protein TIFY8 from Arabidopsis thaliana Is a Transcriptional Repressor

(2014) Amparo Cuéllar Pérez et al.   PLoS One

Protein-protein interaction and gene co-expression maps of ARFs and Aux/IAAs in Arabidopsis

(2014) Sarbottam Piya et al.   Frontiers in Plant Science

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

(2013) H. Hirakawa et al.   DNA RESEARCH

Type 2C protein phosphatase ABI1 is a negative regulator of strawberry fruit ripening

(2013) Hai-feng Jia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

MYB10plays a major role in the regulation of flavonoid/phenylpropanoid metabolism during ripening ofFragaria×ananassafruits

(2013) Laura Medina-Puche et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ethylene is involved in strawberry fruit ripening in an organ-specific manner

(2013) Catharina Merchante et al.   JOURNAL OF EXPERIMENTAL BOTANY

A SHATTERPROOF-like gene controls ripening in non-climacteric strawberries, and auxin and abscisic acid antagonistically affect its expression

(2013) Margherita Daminato et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca

(2013) C. Kang et al.   PLANT CELL

A dynamic interplay between phytohormones is required for fruit development, maturation, and ripening

(2013) Peter McAtee et al.   Frontiers in Plant Science

Non-climacteric ripening in strawberry fruit is linked to ABA, FaNCED2 and FaCYP707A1

(2012) Kai Ji et al.   FUNCTIONAL PLANT BIOLOGY

Hormonal changes during non-climacteric ripening in strawberry

(2012) G. M. Symons et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa)

(2012) Lu-jun Yu et al.   NEW PHYTOLOGIST

Identification and characterization of MYB-bHLH-WD40 regulatory complexes controlling proanthocyanidin biosynthesis in strawberry (Fragaria × ananassa) fruits

(2012) Jan G. Schaart et al.   NEW PHYTOLOGIST

Deep sequencing discovery of novel and conserved microRNAs in strawberry (Fragaria×ananassa)

(2012) Anjing Ge et al.   PHYSIOLOGIA PLANTARUM

FaPYR1 is involved in strawberry fruit ripening

(2011) Ye-mao Chai et al.   JOURNAL OF EXPERIMENTAL BOTANY

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

(2011) T. Vernoux et al.   Molecular Systems Biology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Abscisic Acid Plays an Important Role in the Regulation of Strawberry Fruit Ripening

(2011) Hai-Feng Jia et al.   PLANT PHYSIOLOGY

Molecular Analysis of a Family of Arabidopsis Genes Related to Galacturonosyltransferases

(2011) Y. Kong et al.   PLANT PHYSIOLOGY

Abscisic Acid: Emergence of a Core Signaling Network

(2010) Sean R. Cutler et al.   Annual Review of Plant Biology

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae

(2010) Kui Lin-Wang et al.   BMC PLANT BIOLOGY

Early abscisic acid signal transduction mechanisms: newly discovered components and newly emerging questions

(2010) K. E. Hubbard et al.   GENES & DEVELOPMENT

Abscisic Acid Interacts Antagonistically with Salicylic Acid Signaling Pathway in Rice–Magnaporthe griseaInteraction

(2010) Chang-Jie Jiang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

MYB96-mediated abscisic acid signals induce pathogen resistance response by promoting salicylic acid biosynthesis in Arabidopsis

(2010) Pil Joon Seo et al.   NEW PHYTOLOGIST

The Role of Receptor-Like Kinases in Regulating Cell Wall Function

(2010) B. J. Steinwand et al.   PLANT PHYSIOLOGY

Evidence for a positive regulatory role of strawberry (Fragaria×ananassa) Fa WRKY1 and Arabidopsis At WRKY75 proteins in resistance

(2009) Sonia Encinas-Villarejo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana

(2009) Xiaoyun Jia et al.   PLANT MOLECULAR BIOLOGY

Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana

(2009) H. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome

(2009) C. Addo-Quaye et al.   RNA

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases

(2008) Diana V. Dugas et al.   PLANT MOLECULAR BIOLOGY