Comparative genomics of the Komagataeibacter strains-Efficient bionanocellulose producers

Physicochemical characterization of high-quality bacterial cellulose produced by Komagataeibacter sp. strain W1 and identification of the associated genes in bacterial cellulose production

(2017) Shan-Shan Wang et al.   RSC Advances

Complete genome sequence of the cellulose-producing strain Komagataeibacter nataicola RZS01

(2017) Heng Zhang et al.   Scientific Reports

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins

(2016) Sikander Hayat et al.   BIOINFORMATICS

Progress in bacterial cellulose matrices for biotechnological applications

(2016) Maximiliano L. Cacicedo et al.   BIORESOURCE TECHNOLOGY

CRISPR technologies for bacterial systems: Current achievements and future directions

(2016) Kyeong Rok Choi et al.   BIOTECHNOLOGY ADVANCES

Utilization of acetate buffer to improve bacterial cellulose production by Gluconacetobacter xylinus

(2016) Chia-Hung Kuo et al.   FOOD HYDROCOLLOIDS

Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons fromPseudomonas aeruginosaand Other Bacteria

(2016) Martina Valentini et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dissection of exopolysaccharide biosynthesis in Kozakia baliensis

(2016) Julia U. Brandt et al.   Microbial Cell Factories

Observing cellulose biosynthesis and membrane translocation in crystallo

(2016) Jacob L. W. Morgan et al.   NATURE

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Genome sequence and plasmid transformation of the model high-yield bacterial cellulose producer Gluconacetobacter hansenii ATCC 53582

(2016) Michael Florea et al.   Scientific Reports

Adaptive mutation related to cellulose producibility in Komagataeibacter medellinensis (Gluconacetobacter xylinus) NBRC 3288

(2015) Minenosuke Matsutani et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Knock-out of glucose dehydrogenase gene in Gluconacetobacter xylinus for bacterial cellulose production enhancement

(2015) Chia-Hung Kuo et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

Characterization of cellulose and other exopolysaccharides produced from Gluconacetobacter strains

(2015) Lin Fang et al.   CARBOHYDRATE POLYMERS

Genome-Based Comparison of Cyclic Di-GMP Signaling in Pathogenic and Commensal Escherichia coli Strains

(2015) Tatyana L. Povolotsky et al.   JOURNAL OF BACTERIOLOGY

Cyclic Di-GMP Regulates Multiple Cellular Functions in the Symbiotic Alphaproteobacterium Sinorhizobium meliloti

(2015) Simon Schäper et al.   JOURNAL OF BACTERIOLOGY

Bacterial Signal Transduction by Cyclic Di-GMP and Other Nucleotide Second Messengers

(2015) Regine Hengge et al.   JOURNAL OF BACTERIOLOGY

Change in the plasmid copy number in acetic acid Bacteria in response to growth phase and acetic acid Concentration

(2015) Naoki Akasaka et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.

(2015) Bhavjinder K. Dhillon et al.   NUCLEIC ACIDS RESEARCH

Bacterial cellulose biosynthesis: diversity of operons, subunits, products, and functions

(2015) Ute Römling et al.   TRENDS IN MICROBIOLOGY

Global insights into acetic acid resistance mechanisms and genetic stability of Acetobacter pasteurianus strains by comparative genomics

(2015) Bin Wang et al.   Scientific Reports

A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii

(2015) Agnes P. Chan et al.   GENOME BIOLOGY

Cellulose production and cellulose synthase gene detection in acetic acid bacteria

(2014) Maria José Valera et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Characterization of water-soluble exopolysaccharides from Gluconacetobacter xylinus and their impacts on bacterial cellulose crystallization and ribbon assembly

(2014) Lin Fang et al.   CELLULOSE

Bacterial cellulose films: influence of bacterial strain and drying route on film properties

(2014) Muling Zeng et al.   CELLULOSE

Transfer of Gluconacetobacter kakiaceti, Gluconacetobacter medellinensis and Gluconacetobacter maltaceti to the genus Komagataeibacter as Komagataeibacter kakiaceti comb. nov., Komagataeibacter medellinensis comb. nov. and Komagataeibacter maltaceti comb. nov.

(2014) Y. Yamada   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete genome sequence of Gluconacetobacter xylinus E25 strain—Valuable and effective producer of bacterial nanocellulose

(2014) Katarzyna Kubiak et al.   JOURNAL OF BIOTECHNOLOGY

Bacterial Genome Instability

(2014) E. Darmon et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Diversification of bacterial genome content through distinct mechanisms over different timescales

(2014) Nicholas J. Croucher et al.   Nature Communications

The c-di-GMP recognition mechanism of the PilZ domain of bacterial cellulose synthase subunit A

(2013) Takaaki Fujiwara et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Complete genome sequence and comparative analysis of Acetobacter pasteurianus 386B, a strain well-adapted to the cocoa bean fermentation ecosystem

(2013) Koen Illeghems et al.   BMC GENOMICS

Biosynthesis, production and applications of bacterial cellulose

(2013) Shin-Ping Lin et al.   CELLULOSE

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

(2013) Sergey Nurk et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger

(2013) U. Romling et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Architecture and Gene Repertoire of the Flexible Genome of the Extreme Acidophile Acidithiobacillus caldus

(2013) Lillian G. Acuña et al.   PLoS One

Horizontally Transferred Genetic Elements and Their Role in Pathogenesis of Bacterial Disease

(2013) C. Gyles et al.   VETERINARY PATHOLOGY

Thin stillage supplementation greatly enhances bacterial cellulose production by Gluconacetobacter xylinus

(2012) Jyh-Ming Wu et al.   CARBOHYDRATE POLYMERS

The use of dyed bacterial cellulose to monitor cellulase complex activity

(2012) Marcela Tiboni et al.   CELLULOSE

Description of Komagataeibacter gen. nov., with proposals of new combinations (Acetobacteraceae)

(2012) Yuzo Yamada et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Crystallographic snapshot of cellulose synthesis and membrane translocation

(2012) Jacob L. W. Morgan et al.   NATURE

Rapid identification of acetic acid bacteria using MALDI-TOF mass spectrometry fingerprinting

(2012) Cristina Andrés-Barrao et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Subdivision of the genus Gluconacetobacter Yamada, Hoshino and Ishikawa 1998: the proposal of Komagatabacter gen. nov., for strains accommodated to the Gluconacetobacter xylinus group in the α-Proteobacteria

(2011) Yuzo Yamada et al.   ANNALS OF MICROBIOLOGY

Fast filtering for RNA homology search

(2011) D. L. Kolbe et al.   BIOINFORMATICS

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Biochemical localization of a protein involved in synthesis of Gluconacetobacter hansenii cellulose

(2011) Prashanti R. Iyer et al.   CELLULOSE

Cyclic di-GMP, an established secondary messenger still speeding up

(2011) Ute Römling   ENVIRONMENTAL MICROBIOLOGY

Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar

(2011) T. Iino et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genome Sequence of Gluconacetobacter sp. Strain SXCC-1, Isolated from Chinese Vinegar Fermentation Starter

(2011) X.-j. Du et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of NBRC 3288, a Unique Cellulose-Nonproducing Strain of Gluconacetobacter xylinus Isolated from Vinegar

(2011) H. Ogino et al.   JOURNAL OF BACTERIOLOGY

Genome Sequences of the High-Acetic Acid-Resistant Bacteria Gluconacetobacter europaeus LMG 18890T and G. europaeus LMG 18494 (Reference Strains), G. europaeus 5P3, and Gluconacetobacter oboediens 174Bp2 (Isolated from Vinegar)

(2011) C. Andres-Barrao et al.   JOURNAL OF BACTERIOLOGY

ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes

(2011) Alessandro M Varani et al.   GENOME BIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Genome Sequence of a Cellulose-Producing Bacterium, Gluconacetobacter hansenii ATCC 23769

(2010) P. R. Iyer et al.   JOURNAL OF BACTERIOLOGY

The Accessory Genome of Pseudomonas aeruginosa

(2010) V. L. Kung et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Structure of bacterial cellulose synthase subunit D octamer with four inner passageways

(2010) S.-Q. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5

(2009) Marcelo Bertalan et al.   BMC GENOMICS

Phylogeny and differentiation of species of the genus Gluconacetobacter and related taxa based on multilocus sequence analyses of housekeeping genes and reclassification of Acetobacter xylinus subsp. sucrofermentans as Gluconacetobacter sucrofermentans (Toyosaki et al. 1996) sp. nov., comb. nov.

(2009) I. Cleenwerck et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Influence of different carbon sources on bacterial cellulose production byGluconacetobacter xylinusstrain ATCC 53524

(2009) D. Mikkelsen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus

(2009) Yoshinao Azuma et al.   NUCLEIC ACIDS RESEARCH

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Characterization of Cellulose Production by a Gluconacetobacter xylinus Strain from Kombucha

(2008) Vu Tuan Nguyen et al.   CURRENT MICROBIOLOGY

A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera

(2008) M. Deloger et al.   JOURNAL OF BACTERIOLOGY