Comparing RNA-Seq and microarray gene expression data in two zones of the Arabidopsis root apex relevant to spaceflight

Genetic dissection of the Arabidopsis spaceflight transcriptome: Are some responses dispensable for the physiological adaptation of plants to spaceflight?

(2017) Anna-Lisa Paul et al.   PLoS One

Framework for gradual progression of cell ontogeny in theArabidopsisroot meristem

(2017) Jos R. Wendrich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Systems Biology at the Single-Cell Level

(2017) Marc Libault et al.   TRENDS IN PLANT SCIENCE

Dissecting Low Atmospheric Pressure Stress: Transcriptome Responses to the Components of Hypobaria in Arabidopsis

(2017) Mingqi Zhou et al.   Frontiers in Plant Science

The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing

(2016) Mathilde Royer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Endoplasmic Reticulum Body–Related Gene Expression in Different Root Zones of Arabidopsis Isolated by Laser-Assisted Microdissection

(2016) Maxime Gotté et al.   Plant Genome

The effect of spaceflight on the gravity-sensing auxin gradient of roots: GFP reporter gene microscopy on orbit

(2016) Robert J Ferl et al.   NPJ Microgravity

Spaceflight Induces Specific Alterations in the Proteomes of Arabidopsis

(2015) Robert J. Ferl et al.   ASTROBIOLOGY

Digging deeper: high-resolution genome-scale data yields new insights into root biology

(2015) Rucha Karve et al.   CURRENT OPINION IN PLANT BIOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Conserved Gene Expression Programs in Developing Roots from Diverse Plants

(2015) Ling Huang et al.   PLANT CELL

The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice

(2015) Ning Zhu et al.   PLANT SCIENCE

RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin

(2014) David Secco et al.   BMC GENOMICS

Magnesium availability regulates the development of root hairs inArabidopsis thaliana(L.) Heynh

(2014) YAOFANG NIU et al.   PLANT CELL AND ENVIRONMENT

Roothairless5, which functions in maize (Zea maysL.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase

(2014) Josefine Nestler et al.   PLANT JOURNAL

Microgenomics: Genome-Scale, Cell-Specific Monitoring of Multiple Gene Regulation Tiers

(2013) J. Bailey-Serres   Annual Review of Plant Biology

Organ-specific remodeling of the Arabidopsis transcriptome in response to spaceflight

(2013) Anna-Lisa Paul et al.   BMC PLANT BIOLOGY

Cytokinin Induces Cell Division in the Quiescent Center of the Arabidopsis Root Apical Meristem

(2013) Wenjing Zhang et al.   CURRENT BIOLOGY

Transcriptome profiling of cytokinin and auxin regulation in tomato root

(2013) Sarika Gupta et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gravity Sensing and Signal Transduction in Vascular Plant Primary Roots

(2012) Katherine L. Baldwin et al.   AMERICAN JOURNAL OF BOTANY

Spaceflight Transcriptomes: Unique Responses to a Novel Environment

(2012) Anna-Lisa Paul et al.   ASTROBIOLOGY

Plant growth strategies are remodeled by spaceflight

(2012) Anna-Lisa Paul et al.   BMC PLANT BIOLOGY

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing

(2012) T. Kyndt et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

A Gene Regulatory Network for Root Epidermis Cell Differentiation in Arabidopsis

(2012) Angela Bruex et al.   PLoS Genetics

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Root apex transition zone: a signalling–response nexus in the root

(2010) František Baluška et al.   TRENDS IN PLANT SCIENCE

The Subcellular Localization and Blue-Light-Induced Movement of Phototropin 1-GFP in Etiolated Seedlings of Arabidopsis thalianaw

(2007) Ying-Lang Wan et al.   Molecular Plant