RNA-seq analysis identifies an intricate regulatory network controlling cluster root development in white lupin

ArabidopsisFerritin 1 (AtFer1) Gene Regulation by the Phosphate Starvation Response 1 (AtPHR1) Transcription Factor Reveals a Direct Molecular Link between Iron and Phosphate Homeostasis

(2013) Marc Bournier et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Lateral root formation and growth of Arabidopsis is redundantly regulated by cytokinin metabolism and signalling genes

(2013) Ling Chang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa)

(2013) SuiKang Wang et al.   NEW PHYTOLOGIST

Identification of Downstream Components of Ubiquitin-Conjugating Enzyme PHOSPHATE2 by Quantitative Membrane Proteomics in Arabidopsis Roots

(2013) T.-K. Huang et al.   PLANT CELL

Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery

(2013) D. Secco et al.   PLANT CELL

The alternative respiratory pathway mediates carboxylate synthesis in white lupin cluster roots under phosphorus deprivation

(2013) IGOR FLOREZ-SARASA et al.   PLANT CELL AND ENVIRONMENT

The MPK6-ERF6-ROS-Responsive cis-Acting Element7/GCC Box Complex Modulates Oxidative Gene Transcription and the Oxidative Response in Arabidopsis

(2013) P. Wang et al.   PLANT PHYSIOLOGY

Lateral root development in Arabidopsis: fifty shades of auxin

(2013) Julien Lavenus et al.   TRENDS IN PLANT SCIENCE

Control ofArabidopsisRoot Development

(2012) Jalean J. Petricka et al.   Annual Review of Plant Biology

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

A PHABULOSA/Cytokinin Feedback Loop Controls Root Growth in Arabidopsis

(2012) Raffaele Dello Ioio et al.   CURRENT BIOLOGY

The emerging importance of the SPX domain-containing proteins in phosphate homeostasis

(2012) David Secco et al.   NEW PHYTOLOGIST

Root-derived auxin contributes to the phosphorus-deficiency-induced cluster-root formation in white lupin (Lupinus albus)

(2012) Zhi Bin Meng et al.   PHYSIOLOGIA PLANTARUM

Spatiotemporal Regulation of Lateral Root Organogenesis inArabidopsisby Cytokinin

(2012) Agnieszka Bielach et al.   PLANT CELL

The Signal Transducer NPH3 Integrates the Phototropin1 Photosensor with PIN2-Based Polar Auxin Transport in Arabidopsis Root Phototropism

(2012) Y. Wan et al.   PLANT CELL

PHO2-Dependent Degradation of PHO1 Modulates Phosphate Homeostasis in Arabidopsis

(2012) T.-Y. Liu et al.   PLANT CELL

An RNA-Seq Transcriptome Analysis of Orthophosphate-Deficient White Lupin Reveals Novel Insights into Phosphorus Acclimation in Plants

(2012) J. A. O'Rourke et al.   PLANT PHYSIOLOGY

Signaling Network in Sensing Phosphate Availability in Plants

(2011) Tzyy-Jen Chiou et al.   Annual Review of Plant Biology

The transcription factor PHR1 plays a key role in the regulation of sulfate shoot-to-root flux upon phosphate starvation in Arabidopsis

(2011) Hatem Rouached et al.   BMC PLANT BIOLOGY

RSL genes are sufficient for rhizoid system development in early diverging land plants

(2011) G. Jang et al.   DEVELOPMENT

MicroRNAs as regulators of root development and architecture

(2011) Ghazanfar A. Khan et al.   PLANT MOLECULAR BIOLOGY

Update on White Lupin Cluster Root Acclimation to Phosphorus Deficiency Update on Lupin Cluster Roots

(2011) L. Cheng et al.   PLANT PHYSIOLOGY

The main auxin biosynthesis pathway in Arabidopsis

(2011) K. Mashiguchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root developmental adaptation to phosphate starvation: better safe than sorry

(2011) Benjamin Péret et al.   TRENDS IN PLANT SCIENCE

Genetic Regulation by NLA and MicroRNA827 for Maintaining Nitrate-Dependent Phosphate Homeostasis in Arabidopsis

(2011) Surya Kant et al.   PLoS Genetics

Transcriptional Regulation of ROS Controls Transition from Proliferation to Differentiation in the Root

(2010) Hironaka Tsukagoshi et al.   CELL

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Arabidopsis Tyrosylprotein Sulfotransferase Acts in the Auxin/PLETHORA Pathway in Regulating Postembryonic Maintenance of the Root Stem Cell Niche

(2010) W. Zhou et al.   PLANT CELL

Global effects of the small RNA biogenesis machinery on theArabidopsis thalianatranscriptome

(2010) Sascha Laubinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic control of root development in rice, the model cereal

(2010) Yoan Coudert et al.   TRENDS IN PLANT SCIENCE

Auxin: A Trigger for Change in Plant Development

(2009) Steffen Vanneste et al.   CELL

Conservation of Lotus and Arabidopsis Basic Helix-Loop-Helix Proteins Reveals New Players in Root Hair Development

(2009) B. Karas et al.   PLANT PHYSIOLOGY

Physiological and Transcriptome Analysis of Iron and Phosphorus Interaction in Rice Seedlings

(2009) L. Zheng et al.   PLANT PHYSIOLOGY

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

ER-resident proteins PDR2 and LPR1 mediate the developmental response of root meristems to phosphate availability

(2009) C. A. Ticconi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The auxin influx carrier LAX3 promotes lateral root emergence

(2008) Kamal Swarup et al.   NATURE CELL BIOLOGY

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

Phosphate Availability Alters Lateral Root Development in Arabidopsis by Modulating Auxin Sensitivity via a Mechanism Involving the TIR1 Auxin Receptor

(2008) C.-A. Perez-Torres et al.   PLANT CELL

MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis

(2008) Bikram Datt Pant et al.   PLANT JOURNAL

The Effect of Iron on the Primary Root Elongation of Arabidopsis during Phosphate Deficiency

(2008) J. T. Ward et al.   PLANT PHYSIOLOGY

Regulatory Network of MicroRNA399 and PHO2 by Systemic Signaling

(2008) S.-I Lin et al.   PLANT PHYSIOLOGY

A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency

(2008) Sepideh Torabi et al.   PROTEOMICS