Eco-Metabolomics and Metabolic Modeling: Making the Leap From Model Systems in the Lab to Native Populations in the Field

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(2016) Carlos Alonso-Blanco et al.   CELL

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Dynamic changes in plant secondary metabolites during UV acclimation inArabidopsis thaliana

(2014) Kathleen Hectors et al.   PHYSIOLOGIA PLANTARUM

Solving the Differential Biochemical Jacobian from Metabolomics Covariance Data

(2014) Thomas Nägele et al.   PLoS One

mzGroupAnalyzer-Predicting Pathways and Novel Chemical Structures from Untargeted High-Throughput Metabolomics Data

(2014) Hannes Doerfler et al.   PLoS One

Genomic Signatures of Specialized Metabolism in Plants

(2014) L. Chae et al.   SCIENCE

Metabolomics and its use in ecology

(2013) Oliver A. H. Jones et al.   AUSTRAL ECOLOGY

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden

(2013) Quan Long et al.   NATURE GENETICS

Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments

(2013) Volker Egelhofer et al.   Nature Protocols

Explaining intraspecific diversity in plant secondary metabolites in an ecological context

(2013) Ben D. Moore et al.   NEW PHYTOLOGIST

Short read sequencing in studies of natural variation and adaptation

(2012) Ben Hunter et al.   CURRENT OPINION IN PLANT BIOLOGY

COVAIN: a toolbox for uni- and multivariate statistics, time-series and correlation network analysis and inverse estimation of the differential Jacobian from metabolomics covariance data

(2012) Xiaoliang Sun et al.   Metabolomics

Granger causality in integrated GC–MS and LC–MS metabolomics data reveals the interface of primary and secondary metabolism

(2012) Hannes Doerfler et al.   Metabolomics

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

Proteomics in evolutionary ecology: linking the genotype with the phenotype

(2012) ANGEL P. DIZ et al.   MOLECULAR ECOLOGY

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

From Bench to Bountiful Harvests: A Road Map for the Next Decade ofArabidopsisResearch

(2012) Irene Lavagi et al.   PLANT CELL

Taking the Next Step: Building an Arabidopsis Information Portal

(2012)   PLANT CELL

Effects of Dominance and Diversity on Productivity along Ellenberg's Experimental Water Table Gradients

(2012) Andy Hector et al.   PLoS One

The return of the variance: intraspecific variability in community ecology

(2012) Cyrille Violle et al.   TRENDS IN ECOLOGY & EVOLUTION

Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana

(2012) Sabrina Kleessen et al.   Nature Communications

Visualising associations between paired ‘omics’ data sets

(2012) Ignacio González et al.   BioData Mining

Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing

(2011) Wolfram Weckwerth   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

MissForest--non-parametric missing value imputation for mixed-type data

(2011) D. J. Stekhoven et al.   BIOINFORMATICS

Ecological metabolomics: overview of current developments and future challenges

(2011) Jordi Sardans et al.   CHEMOECOLOGY

MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber

(2011) Wolfgang Hoehenwarter et al.   JOURNAL OF PROTEOME RESEARCH

Green systems biology — From single genomes, proteomes and metabolomes to ecosystems research and biotechnology

(2011) Wolfram Weckwerth   Journal of Proteomics

Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics

(2011) D. Weigel   PLANT PHYSIOLOGY

Evidence for a role of raffinose in stabilizing photosystem II during freeze–thaw cycles

(2011) Markus Knaupp et al.   PLANTA

Adaptation to Climate Across the Arabidopsis thaliana Genome

(2011) A. M. Hancock et al.   SCIENCE

THE GENOTYPICAL RESPONSE OF THE PLANT SPECIES TO THE HABITAT

(2010) GÖTE TURESSON   HEREDITAS

Metabolomics: the chemistry between ecology and genetics

(2010) MIRKA MACEL et al.   Molecular Ecology Resources

Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana

(2010) Marco Todesco et al.   NATURE

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Multiple functional roles of flavonoids in photoprotection

(2010) Giovanni Agati et al.   NEW PHYTOLOGIST

Genotype-phenotype mapping and the end of the 'genes as blueprint' metaphor

(2010) M. Pigliucci   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Metabolomics for plant stress response

(2010) Vladimir Shulaev et al.   PHYSIOLOGIA PLANTARUM

Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen

(2010) Itsara Pracharoenwattana et al.   PLANT JOURNAL

Integration of polyamines in the cold acclimation response

(2010) Rubén Alcázar et al.   PLANT SCIENCE

Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species

(2010) Christian Scherling et al.   PLoS One

The Scale of Population Structure in Arabidopsis thaliana

(2010) Alexander Platt et al.   PLoS Genetics

The Complex Genetic Architecture of the Metabolome

(2010) Eva K. F. Chan et al.   PLoS Genetics

integrOmics: an R package to unravel relationships between two omics datasets

(2009) Kim-Anh Lê Cao et al.   BIOINFORMATICS

Genetical metabolomics: closing in on phenotypes

(2009) Joost JB Keurentjes   CURRENT OPINION IN PLANT BIOLOGY

Environmental regulation of floral anthocyanin synthesis inIpomoea purpurea

(2009) YINGQING LU et al.   MOLECULAR ECOLOGY

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

Integration of Metabolomic and Proteomic Phenotypes

(2008) Stefanie Wienkoop et al.   MOLECULAR & CELLULAR PROTEOMICS

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment

(2008) Wolfgang Hoehenwarter et al.   PROTEOMICS