Novel Widespread Marine Oomycetes Parasitising Diatoms, Including the Toxic Genus Pseudo-nitzschia: Genetic, Morphological, and Ecological Characterisation

Integrating chytrid fungal parasites into plankton ecology: research gaps and needs

(2017) Thijs Frenken et al.   ENVIRONMENTAL MICROBIOLOGY

Pathogens of brown algae: culture studies of Anisolpidium ectocarpii and A. rosenvingei reveal that the Anisolpidiales are uniflagellated oomycetes

(2017) Claire M.M. Gachon et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Neue Laser und Strahlquellen - alte und neue Risiken?

(2017) Uwe Paasch et al.   JOURNAL DER DEUTSCHEN DERMATOLOGISCHEN GESELLSCHAFT

UniEuk : Time to Speak a Common Language in Protistology!

(2017) Cédric Berney et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Phylogeny of Miracula helgolandica gen. et sp. nov. and Olpidiopsis drebesii sp. nov., two basal oomycete parasitoids of marine diatoms, with notes on the taxonomy of Ectrogella-like species

(2017) Anthony T. Buaya et al.   MYCOLOGICAL PROGRESS

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

(2017) Frédéric Mahé et al.   Nature Ecology & Evolution

Effects of eukaryotic pathogens (Chytridiomycota and Oomycota) on marine benthic diatom communities in the Solthörn tidal flat (southern North Sea, Germany)

(2016) Bettina Scholz et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Zoosporic parasites infecting marine diatoms – A black box that needs to be opened

(2016) Bettina Scholz et al.   Fungal Ecology

Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance

(2016) Joe D Taylor et al.   ISME Journal

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

(2016) Olga Chernomor et al.   SYSTEMATIC BIOLOGY

Towards a universal barcode of oomycetes - a comparison of thecox1 andcox2 loci

(2015) Young-Joon Choi et al.   Molecular Ecology Resources

Multi-locus tree and species tree approaches toward resolving a complex clade of downy mildews (Straminipila, Oomycota), including pathogens of beet and spinach

(2015) Young-Joon Choi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The diatom parasite Lagenisma coscinodisci (Lagenismatales, Oomycota) is an early diverging lineage of the Saprolegniomycetes

(2015) Marco Thines et al.   MYCOLOGICAL PROGRESS

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Swarm v2: highly-scalable and high-resolution amplicon clustering

(2015) Frédéric Mahé et al.   PeerJ

The ocean sampling day consortium

(2015) Anna Kopf et al.   GigaScience

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Parasitic infection of the diatom Guinardia delicatula, a recurrent and ecologically important phenomenon on the New England Shelf

(2014) EE Peacock et al.   MARINE ECOLOGY PROGRESS SERIES

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

A Quantitative Assessment of the Role of the Parasite Amoebophrya in the Termination of Alexandrium fundyense Blooms within a Small Coastal Embayment

(2013) Lourdes Velo-Suárez et al.   PLoS One

Distribution Patterns and Phylogeny of Marine Stramenopiles in the North Pacific Ocean

(2012) Yun-Chi Lin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Phytoplankton chytridiomycosis: community structure and infectivity of fungal parasites in aquatic ecosystems

(2012) Serena Rasconi et al.   ENVIRONMENTAL MICROBIOLOGY

Comparing the Hyper-Variable V4 and V9 Regions of the Small Subunit rDNA for Assessment of Ciliate Environmental Diversity

(2012) Micah Dunthorn et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Pseudo-nitzschia (Bacillariophyceae) species, domoic acid and amnesic shellfish poisoning: revisiting previous paradigms

(2012) Aurélie Lelong et al.   PHYCOLOGIA

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health

(2011) Vera L. Trainer et al.   HARMFUL ALGAE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions

(2010) Anke Behnke et al.   ENVIRONMENTAL MICROBIOLOGY

Reproductive plasticity and local adaptation in the host–parasite system formed by the toxic Alexandrium minutum and the dinoflagellate parasite Parvilucifera sinerae

(2010) Rosa Isabel Figueroa et al.   HARMFUL ALGAE

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Limits to gene flow in a cosmopolitan marine planktonic diatom

(2010) G. Casteleyn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Algal diseases: spotlight on a black box

(2010) Claire M.M. Gachon et al.   TRENDS IN PLANT SCIENCE

Defining DNA-Based Operational Taxonomic Units for Microbial-Eukaryote Ecology

(2009) D. A. Caron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Oomycete and chytrid infections of the marine diatom Pseudo-nitzschia pungens (Bacillariophyceae) from Prince Edward Island, Canada

(2009) Louis A. Hanic et al.   Botany

MtZoa: A general mitochondrial amino acid substitutions model for animal evolutionary studies

(2009) Omar Rota-Stabelli et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Unexpected Importance of Potential Parasites in the Composition of the Freshwater Small-Eukaryote Community

(2008) C. Lepere et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Responsibility of microzooplankton and parasite pressure for the demise of toxic dinoflagellate blooms

(2008) DJS Montagnes et al.   AQUATIC MICROBIAL ECOLOGY

Parasites in food webs: the ultimate missing links

(2008) Kevin D. Lafferty et al.   ECOLOGY LETTERS

Widespread occurrence and genetic diversity of marine parasitoids belonging toSyndiniales(Alveolata)

(2008) L. Guillou et al.   ENVIRONMENTAL MICROBIOLOGY

Control of Toxic Marine Dinoflagellate Blooms by Serial Parasitic Killers

(2008) A. Chambouvet et al.   SCIENCE