Opportunistic Bacteria Dominate the Soil Microbiome Response to Phenanthrene in a Microcosm-Based Study

Temporal dynamics of microbial communities in microcosms in response to pollutants

(2017) Shuo Jiao et al.   MOLECULAR ECOLOGY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Shifts in microbial community structure during in situ surfactant-enhanced bioremediation of polycyclic aromatic hydrocarbon-contaminated soil

(2016) Lingwen Wang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Diversity is the question, not the answer

(2016) Ashley Shade   ISME Journal

Comparative metagenomic analysis of PAH degradation in soil by a mixed microbial consortium

(2016) German Zafra et al.   JOURNAL OF HAZARDOUS MATERIALS

Reconstruction of metabolic networks in a fluoranthene-degrading enrichments from polycyclic aromatic hydrocarbon polluted soil

(2016) Jian-Kang Zhao et al.   JOURNAL OF HAZARDOUS MATERIALS

Pyrosequencing analysis of bacterial diversity in soils contaminated long-term with PAHs and heavy metals: Implications to bioremediation

(2016) Saranya Kuppusamy et al.   JOURNAL OF HAZARDOUS MATERIALS

Changes in the Bacterial Community Structure of Remediated Anthracene-Contaminated Soils

(2016) Laura Delgado-Balbuena et al.   PLoS One

Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System

(2016) Sean M. Gibbons et al.   mBio

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A Review

(2016) Debajyoti Ghosal et al.   Frontiers in Microbiology

Short-Term Rhizosphere Effect on Available Carbon Sources, Phenanthrene Degradation, and Active Microbiome in an Aged-Contaminated Industrial Soil

(2016) François Thomas et al.   Frontiers in Microbiology

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill

(2015) Luis M Rodriguez-R et al.   ISME Journal

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature

(2015) Rafael Bargiela et al.   Scientific Reports

Bioremediation of petroleum hydrocarbons: catabolic genes, microbial communities, and applications

(2014) Sebastián Fuentes et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Abundance and diversity of soil petroleum hydrocarbon-degrading microbial communities in oil exploring areas

(2014) Yuyin Yang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effects of polycyclic aromatic hydrocarbons on microbial community structure and PAH ring hydroxylating dioxygenase gene abundance in soil

(2014) Przemyslaw Sawulski et al.   BIODEGRADATION

Spatial patterns of microbial diversity and activity in an aged creosote-contaminated site

(2014) Shinjini Mukherjee et al.   ISME Journal

Microbial community structure during fluoranthene degradation in the presence of plants

(2014) S. Storey et al.   JOURNAL OF APPLIED MICROBIOLOGY

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Inoculation of PAH-degrading strains of Fusarium solani and Arthrobacter oxydans in rhizospheric sand and soil microcosms: microbial interactions and PAH dissipation

(2013) Cécile Thion et al.   BIODEGRADATION

Evaluation of Polycyclic Aromatic Hydrocarbons Using Analytical Methods, Toxicology, and Risk Assessment Research: Seafood Safety after a Petroleum Spill as an Example

(2013) Jeffrey Wickliffe et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Is there sufficient ‘sink’ in current bioaccessibility determinations of organic pollutants in soils?

(2013) C.D. Collins et al.   ENVIRONMENTAL POLLUTION

Bacterial diversity and functional interactions between bacterial strains from a phenanthrene-degrading consortium obtained from a chronically contaminated-soil

(2013) Sabrina Festa et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Biodegradation and Kinetics of Phenanthrene and Pyrene in the Presence of Nonionic Surfactants by Arthrobacter Strain Sphe3

(2013) Mahendra Aryal et al.   WATER AIR AND SOIL POLLUTION

Effects of three different PAHs on nitrogen-fixing bacterial diversity in mangrove sediment

(2012) Fu-Lin Sun et al.   ECOTOXICOLOGY

Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil

(2012) Alexandre de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Comparison of a bioremediation process of PAHs in a PAH-contaminated soil at field and laboratory scales

(2012) Christine Lors et al.   ENVIRONMENTAL POLLUTION

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Recalcitrance of polycyclic aromatic hydrocarbons in soil contributes to background pollution

(2011) Rosa Posada-Baquero et al.   ENVIRONMENTAL POLLUTION

Bioremediation of PAHs-contaminated soil through composting: Influence of bioaugmentation and biostimulation on contaminant biodegradation

(2011) Tahseen Sayara et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Evolution of bacterial community during bioremediation of PAHs in a coal tar contaminated soil

(2010) Christine Lors et al.   CHEMOSPHERE

Concentrations, sources and spatial distribution of polycyclic aromatic hydrocarbons in soils from Beijing, Tianjin and surrounding areas, North China

(2010) Wentao Wang et al.   ENVIRONMENTAL POLLUTION

Microbial communities to mitigate contamination of PAHs in soil—possibilities and challenges: a review

(2010) F. Fernández-Luqueño et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Using population dynamics analysis by DGGE to design the bacterial consortium isolated from mangrove sediments for biodegradation of PAHs

(2010) Liu HuiJie et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Changes through time: integrating microorganisms into the study of succession

(2010) Noah Fierer et al.   RESEARCH IN MICROBIOLOGY

Diet-Induced Metabolic Improvements in a Hamster Model of Hypercholesterolemia Are Strongly Linked to Alterations of the Gut Microbiota

(2009) I. Martinez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Arthrobacter phenanthrenivorans sp. nov., to accommodate the phenanthrene-degrading bacterium Arthrobacter sp. strain Sphe3

(2009) A. Kallimanis et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Aromatic hydrocarbon degradation genes from chronically polluted Subantarctic marine sediments

(2009) M.S. Marcos et al.   LETTERS IN APPLIED MICROBIOLOGY

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

(2009) Patrick D. Schloss   PLoS One

Bacterial community dynamics during bioremediation of phenanthrene- and fluoranthene-amended soil

(2008) Lorraine M. Muckian et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα) genes from Gram positive and Gram negative bacteria in soil and sediment samples

(2008) Aurélie Cébron et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Microbial consortium bioaugmentation of a polycyclic aromatic hydrocarbons contaminated soil

(2007) Rodrigo J.S. Jacques et al.   BIORESOURCE TECHNOLOGY