Efficient pedigree recording for fast population genetics simulation

A Model of Compound Heterozygous, Loss-of-Function Alleles Is Broadly Consistent with Observations from Complex-Disease GWAS Datasets

(2017) Jaleal S. Sanjak et al.   PLoS Genetics

Deconstructing isolation-by-distance: The genomic consequences of limited dispersal

(2017) Stepfanie M. Aguillon et al.   PLoS Genetics

The Genetic Cost of Neanderthal Introgression

(2016) Kelley Harris et al.   GENETICS

SLiM 2: Flexible, Interactive Forward Genetic Simulations

(2016) Benjamin C. Haller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes

(2016) Jerome Kelleher et al.   PLoS Computational Biology

The Genetic Cost of Neanderthal Introgression

(2016) Kelley Harris et al.   GENETICS

The SMC' Is a Highly Accurate Approximation to the Ancestral Recombination Graph

(2015) P. R. Wilton et al.   GENETICS

A C++ Template Library for Efficient Forward-Time Population Genetic Simulation of Large Populations

(2014) Kevin R. Thornton   GENETICS

Distortion of genealogical properties when the sample is very large

(2014) Anand Bhaskar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coalescent simulation in continuous space: Algorithms for large neighbourhood size

(2014) J. Kelleher et al.   THEORETICAL POPULATION BIOLOGY

Rapid forward-in-time simulation at the chromosome and genome level

(2013) Andre J Aberer et al.   BMC BIOINFORMATICS

SLiM: Simulating Evolution with Selection and Linkage

(2013) Philipp W. Messer   GENETICS

Gene Genealogies Within a Fixed Pedigree, and the Robustness of Kingman's Coalescent

(2012) J. Wakeley et al.   GENETICS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination

(2010) Nicolas Ray et al.   BIOINFORMATICS

A NEW MODEL FOR EXTINCTION AND RECOLONIZATION IN TWO DIMENSIONS: QUANTIFYING PHYLOGEOGRAPHY

(2010) Nicholas H. Barton et al.   EVOLUTION

Recovering Population Parameters from a Single Gene Genealogy: An Unbiased Estimator of the Growth Rate

(2010) Yosef E. Maruvka et al.   MOLECULAR BIOLOGY AND EVOLUTION

Exploring Population Genetic Models With Recombination Using Efficient Forward-Time Simulations

(2008) B. Padhukasahasram et al.   GENETICS