Rapid forward-in-time simulation at the chromosome and genome level

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

A Model for the Effect of Homologous Recombination on Microbial Diversification

(2011) James R. Doroghazi et al.   Genome Biology and Evolution

Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

(2011) JUNRUI LI et al.   MOLECULAR ECOLOGY

Population genetic inference from genomic sequence variation

(2010) J. E. Pool et al.   GENOME RESEARCH

Human and Non-Human Primate Genomes Share Hotspots of Positive Selection

(2010) David Enard et al.   PLoS Genetics

Simulation of Genes and Genomes Forward in Time

(2009) Antonio Carvajal-Rodriguez   CURRENT GENOMICS

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

Fregene: Simulation of realistic sequence-level data in populations and ascertained samples

(2008) Marc Chadeau-Hyam et al.   BMC BIOINFORMATICS

Exploring Population Genetic Models With Recombination Using Efficient Forward-Time Simulations

(2008) B. Padhukasahasram et al.   GENETICS