SLiM 2: Flexible, Interactive Forward Genetic Simulations

Can Population Genetics Adapt to Rapid Evolution?

(2016) Philipp W. Messer et al.   TRENDS IN GENETICS

Reconstruction and Simulation of Neocortical Microcircuitry

(2015) Henry Markram et al.   CELL

Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments

(2015) Elizabeth R Jerison et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Methods to characterize selective sweeps using time serial samples: an ancient DNA perspective

(2015) Anna-Sapfo Malaspinas   MOLECULAR ECOLOGY

Quantitative evolutionary dynamics using high-resolution lineage tracking

(2015) Sasha F. Levy et al.   NATURE

Methods and models for unravelling human evolutionary history

(2015) Joshua G. Schraiber et al.   NATURE REVIEWS GENETICS

The mutagenic chain reaction: A method for converting heterozygous to homozygous mutations

(2015) V. M. Gantz et al.   SCIENCE

A C++ Template Library for Efficient Forward-Time Population Genetic Simulation of Large Populations

(2014) Kevin R. Thornton   GENETICS

An overview of the utility of population simulation software in molecular ecology

(2014) Sean Hoban   MOLECULAR ECOLOGY

Climate forecasting: Build high-resolution global climate models

(2014) Tim Palmer   NATURE

Thinking too positive? Revisiting current methods of population genetic selection inference

(2014) Claudia Bank et al.   TRENDS IN GENETICS

forqs: forward-in-time simulation of recombination, quantitative traits and selection

(2013) Darren Kessner et al.   BIOINFORMATICS

SLiM: Simulating Evolution with Selection and Linkage

(2013) Philipp W. Messer   GENETICS

Genome sequencing and population genomics in non-model organisms

(2013) Hans Ellegren   TRENDS IN ECOLOGY & EVOLUTION

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

(2011) Laurent Excoffier et al.   BIOINFORMATICS

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus

(2010) Gregory Ewing et al.   BIOINFORMATICS

VISUAL DEBUGGING: A WAY OF ANALYZING, UNDERSTANDING AND COMMUNICATING BOTTOM-UP SIMULATION MODELS IN ECOLOGY

(2010) VOLKER GRIMM   NATURAL RESOURCE MODELING

Bioclipse 2: A scriptable integration platform for the life sciences

(2009) Ola Spjuth et al.   BMC BIOINFORMATICS

Simulation of Genes and Genomes Forward in Time

(2009) Antonio Carvajal-Rodriguez   CURRENT GENOMICS

A flexible forward simulator for populations subject to selection and demography

(2008) R. D. Hernandez   BIOINFORMATICS

quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation

(2008) S. Neuenschwander et al.   BIOINFORMATICS