Lung fibroblasts express a miR-19a-19b-20a sub-cluster to suppress TGF-β-associated fibroblast activation in murine pulmonary fibrosis

The role of microRNA-155/liver X receptor pathway in experimental and idiopathic pulmonary fibrosis

(2017) Mariola Kurowska-Stolarska et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Detecting the Molecular System Signatures of Idiopathic Pulmonary Fibrosis through Integrated Genomic Analysis

(2017) Indu Gangwar et al.   Scientific Reports

FGF2 inhibits endothelial–mesenchymal transition through microRNA-20a-mediated repression of canonical TGF-β signaling

(2016) Ana C. P. Correia et al.   JOURNAL OF CELL SCIENCE

miR-19a, -19b, and -26b Mediate CTGF Expression and Pulmonary Fibroblast Differentiation

(2016) Yen-Chou Chen et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Hyaluronan synthase 2 regulates fibroblast senescence in pulmonary fibrosis

(2016) Yuejuan Li et al.   MATRIX BIOLOGY

Autophagy inhibition of hsa-miR-19a-3p/19b-3p by targeting TGF-β R II during TGF-β1-induced fibrogenesis in human cardiac fibroblasts

(2016) Meijuan Zou et al.   Scientific Reports

Reduced Supply of Monocyte-Derived Macrophages Leads to a Transition from Nodular to Diffuse Lesions and Tissue Cell Activation in Silica-Induced Pulmonary Fibrosis in Mice

(2015) Shigeyuki Shichino et al.   AMERICAN JOURNAL OF PATHOLOGY

Intratracheal Cell Transfer Demonstrates the Profibrotic Potential of Resident Fibroblasts in Pulmonary Fibrosis

(2015) Tatsuya Tsukui et al.   AMERICAN JOURNAL OF PATHOLOGY

DIANA-miRPath v3.0: deciphering microRNA function with experimental support

(2015) Ioannis S. Vlachos et al.   NUCLEIC ACIDS RESEARCH

Integrative analyses of miRNA and proteomics identify potential biological pathways associated with onset of pulmonary fibrosis in the bleomycin rat model

(2015) Satoki Fukunaga et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The Antifibrotic Effects and Mechanisms of MicroRNA-26a Action in Idiopathic Pulmonary Fibrosis

(2014) Haihai Liang et al.   MOLECULAR THERAPY

Regulation of microRNA biogenesis

(2014) Minju Ha et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

MicroRNAs in cancer: biomarkers, functions and therapy

(2014) Josie Hayes et al.   TRENDS IN MOLECULAR MEDICINE

Integrated analyses identify the involvement of microRNA-26a in epithelial–mesenchymal transition during idiopathic pulmonary fibrosis

(2014) H Liang et al.   Cell Death & Disease

Very Late Antigen-5 Facilitates Stromal Progenitor Cell Differentiation Into Myofibroblast

(2014) Namita Sen et al.   Stem Cells Translational Medicine

Qualitative Rather than Quantitative Changes Are Hallmarks of Fibroblasts in Bleomycin-Induced Pulmonary Fibrosis

(2013) Tatsuya Tsukui et al.   AMERICAN JOURNAL OF PATHOLOGY

Epigenetic Regulation ofmiR-17∼92Contributes to the Pathogenesis of Pulmonary Fibrosis

(2013) Duaa Dakhlallah et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

TCC: an R package for comparing tag count data with robust normalization strategies

(2013) Jianqiang Sun et al.   BMC BIOINFORMATICS

miR-145 regulates myofibroblast differentiation and lung fibrosis

(2013) Shanzhong Yang et al.   FASEB JOURNAL

Relaxin decreases the severity of established hepatic fibrosis in mice

(2013) Robert G. Bennett et al.   LIVER INTERNATIONAL

Non-biased and efficient global amplification of a single-cell cDNA library

(2013) Huan Huang et al.   NUCLEIC ACIDS RESEARCH

The increase of microRNA-21 during lung fibrosis and its contribution to epithelial-mesenchymal transition in pulmonary epithelial cells

(2013) Mitsuhiro Yamada et al.   RESPIRATORY RESEARCH

Periostin promotes fibrosis and predicts progression in patients with idiopathic pulmonary fibrosis

(2012) Payal K. Naik et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

Overexpression of insulin like growth factor binding protein 5 reduces liver fibrosis in chronic cholangiopathy

(2012) Aleksandar Sokolović et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Lysophosphatidic acid activates TGFBIp expression in human corneal fibroblasts through a TGF-β1-dependent pathway

(2012) Eun Su Jeon et al.   CELLULAR SIGNALLING

miR-29 Inhibits Bleomycin-induced Pulmonary Fibrosis in Mice

(2012) Jun Xiao et al.   MOLECULAR THERAPY

Lineage tracing and genetic ablation of ADAM12+ perivascular cells identify a major source of profibrotic cells during acute tissue injury

(2012) Sophie Dulauroy et al.   NATURE MEDICINE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Idiopathic pulmonary fibrosis

(2011) Talmadge E King et al.   LANCET

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

miR-124a is required for hippocampal axogenesis and retinal cone survival through Lhx2 suppression

(2011) Rikako Sanuki et al.   NATURE NEUROSCIENCE

Inhibition and Role of let-7d in Idiopathic Pulmonary Fibrosis

(2010) Kusum V. Pandit et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Selective expression of connective tissue growth factor in fibroblasts in vivo promotes systemic tissue fibrosis

(2010) Sonali Sonnylal et al.   ARTHRITIS AND RHEUMATISM

MicroRNAs under the spotlight in inflammatory arthritis

(2010) Jenny Buckland   Nature Reviews Rheumatology

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Pivotal role of connective tissue growth factor in lung fibrosis: MAPK-dependent transcriptional activation of type I collagen

(2009) Markella Ponticos et al.   ARTHRITIS AND RHEUMATISM

Negligible Contribution of Bone Marrow-Derived Cells to Collagen Production During Hepatic Fibrogenesis in Mice

(2009) Reiichi Higashiyama et al.   GASTROENTEROLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

Integration of non-SMAD and SMAD signaling in TGF-β1-induced plasminogen activator inhibitor type-1 gene expression in vascular smooth muscle cells

(2008) Rohan Samarakoon et al.   THROMBOSIS AND HAEMOSTASIS

Cellular and molecular mechanisms of fibrosis

(2007) TA Wynn   JOURNAL OF PATHOLOGY