Local and global chromatin interactions are altered by large genomic deletions associated with human brain development

A neurogenetic model for the study of schizophrenia spectrum disorders: the International 22q11.2 Deletion Syndrome Brain Behavior Consortium

(2017) R E Gur et al.   MOLECULAR PSYCHIATRY

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations

(2016) Phillippa C. Taberlay et al.   GENOME RESEARCH

Deletions at 22q11.2 in idiopathic Parkinson's disease: a combined analysis of genome-wide association data

(2016) Kin Y Mok et al.   LANCET NEUROLOGY

Chromosomal contacts connect loci associated with autism, BMI and head circumference phenotypes

(2016) M N Loviglio et al.   MOLECULAR PSYCHIATRY

Epigenetic Basis of Mental Illness

(2016) Eric J. Nestler et al.   NEUROSCIENTIST

Understanding the genetic liability to schizophrenia through the neuroepigenome

(2016) John F. Fullard et al.   SCHIZOPHRENIA RESEARCH

Movement disorders and other motor abnormalities in adults with 22q11.2 deletion syndrome

(2015) Erik Boot et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

Developmental trajectories in 22q11.2 deletion syndrome

(2015) Ann Swillen et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS

HiCdat: a fast and easy-to-use Hi-C data analysis tool

(2015) Marc W. Schmid et al.   BMC BIOINFORMATICS

Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions

(2015) Darío G. Lupiáñez et al.   CELL

CNVs in neuropsychiatric disorders

(2015) George Kirov   HUMAN MOLECULAR GENETICS

Recurrent copy number variations as risk factors for neurodevelopmental disorders: critical overview and analysis of clinical implications

(2015) Fátima Torres et al.   JOURNAL OF MEDICAL GENETICS

Disrupted intricacy of histone H3K4 methylation in neurodevelopmental disorders

(2015) Christina N Vallianatos et al.   Epigenomics

Mutations and Modeling of the Chromatin Remodeler CHD8 Define an Emerging Autism Etiology

(2015) Rebecca A. Barnard et al.   Frontiers in Neuroscience

22q11.2 deletion syndrome

(2015) Donna M. McDonald-McGinn et al.   Nature Reviews Disease Primers

Transcriptional Consequences of 16p11.2 Deletion and Duplication in Mouse Cortex and Multiplex Autism Families

(2014) Ian Blumenthal et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Psychiatric Disorders From Childhood to Adulthood in 22q11.2 Deletion Syndrome: Results From the International Consortium on Brain and Behavior in 22q11.2 Deletion Syndrome

(2014) Maude Schneider et al.   AMERICAN JOURNAL OF PSYCHIATRY

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data

(2014) Wenyuan Li et al.   BIOINFORMATICS

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Combining a wavelet change point and the Bayes factor for analysing chromosomal interaction data

(2014) Yoli Shavit et al.   Molecular BioSystems

Whole-genome haplotyping using long reads and statistical methods

(2014) Volodymyr Kuleshov et al.   NATURE BIOTECHNOLOGY

The Genome in Three Dimensions: A New Frontier in Human Brain Research

(2013) Amanda C. Mitchell et al.   BIOLOGICAL PSYCHIATRY

Genome-wide gene expression in a patient with 15q13.3 homozygous microdeletion syndrome

(2013) Jean-Baptiste Le Pichon et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Evidence that duplications of 22q11.2 protect against schizophrenia

(2013) E Rees et al.   MOLECULAR PSYCHIATRY

Extensive Variation in Chromatin States Across Humans

(2013) M. Kasowski et al.   SCIENCE

Association Between Early-Onset Parkinson Disease and 22q11.2 Deletion Syndrome

(2013) Nancy J. Butcher et al.   JAMA Neurology

HiTC: exploration of high-throughput ‘C’ experiments

(2012) Nicolas Servant et al.   BIOINFORMATICS

HiCNorm: removing biases in Hi-C data via Poisson regression

(2012) Ming Hu et al.   BIOINFORMATICS

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells

(2012) Alexej Abyzov et al.   NATURE

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

(2012) Maxim Imakaev et al.   NATURE METHODS

Copy Number Variants in Schizophrenia: Confirmation of Five Previous Findings and New Evidence for 3q29 Microdeletions and VIPR2 Duplications

(2011) Douglas F. Levinson et al.   AMERICAN JOURNAL OF PSYCHIATRY

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Subnuclear segregation of genes and core promoter factors in myogenesis

(2011) Jie Yao et al.   GENES & DEVELOPMENT

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture

(2011) Eitan Yaffe et al.   NATURE GENETICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Mitochondrial localization and function of a subset of 22q11 deletion syndrome candidate genes

(2008) T.M. Maynard et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Rare chromosomal deletions and duplications increase risk of schizophrenia

(2008) Jennifer L. Stone et al.   NATURE

Large recurrent microdeletions associated with schizophrenia

(2008) Hreinn Stefansson et al.   NATURE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH