A tRNA half modulates translation as stress response in Trypanosoma brucei

Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells

(2018) Nicola Guzzi et al.   CELL

New tricks from old dogs join the fight against ageing

(2017) Neil Savage   NATURE

Editing and methylation at a single site by functionally interdependent activities

(2017) Mary Anne T. Rubio et al.   NATURE

tRNA-derived small RNAs target transposable element transcripts

(2017) German Martinez et al.   NUCLEIC ACIDS RESEARCH

Discovery and function of transfer RNA-derived fragments and their role in disease

(2017) Ana Raquel Soares et al.   Wiley Interdisciplinary Reviews-RNA

Gene expression in Kinetoplastids

(2016) CE Clayton   CURRENT OPINION IN MICROBIOLOGY

Ribosome Shut-Down by 16S rRNA Fragmentation in Stationary-Phase Escherichia coli

(2016) Hannes Luidalepp et al.   JOURNAL OF MOLECULAR BIOLOGY

Analysis of RNA modifications by liquid chromatography–tandem mass spectrometry

(2016) Kathrin Thüring et al.   METHODS

The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic

(2016) Valérie Cognat et al.   NUCLEIC ACIDS RESEARCH

YB-1 regulates tiRNA-induced Stress Granule formation but not translational repression

(2016) Shawn M. Lyons et al.   NUCLEIC ACIDS RESEARCH

A tRNA-derived fragment competes with mRNA for ribosome binding and regulates translation during stress

(2016) Jennifer Gebetsberger et al.   RNA Biology

The emerging biology of RNA post-transcriptional modifications

(2016) Sigrid Nachtergaele et al.   RNA Biology

Small RNAs derived from tRNAs and rRNAs are highly enriched in exosomes from both old and new world Leishmania providing evidence for conserved exosomal RNA Packaging

(2015) Ulrike Lambertz et al.   BMC GENOMICS

Ribosome-associated ncRNAs: An emerging class of translation regulators

(2015) Andreas Pircher et al.   RNA Biology

tRNA fragments in human health and disease

(2014) Paul Anderson et al.   FEBS LETTERS

Characterization of the small RNA content of Trypanosoma cruzi extracellular vesicles

(2014) Ethel Bayer-Santos et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

An mRNA-Derived Noncoding RNA Targets and Regulates the Ribosome

(2014) Andreas Pircher et al.   MOLECULAR CELL

Comparative ribosome profiling reveals extensive translational complexity in different Trypanosoma brucei life cycle stages

(2014) Juan-José Vasquez et al.   NUCLEIC ACIDS RESEARCH

High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome

(2013) Yaser Hashem et al.   NATURE

Extracellular vesicles shed by Trypanosoma cruzi are linked to small RNA pathways, life cycle regulation, and susceptibility to infection of mammalian cells

(2013) Maria R. Garcia-Silva et al.   PARASITOLOGY RESEARCH

Slicing tRNAs to boost functional ncRNA diversity

(2013) Jennifer Gebetsberger et al.   RNA Biology

Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei

(2013) L.-L. Zheng et al.   RNA

Reversible and Rapid Transfer-RNA Deactivation as a Mechanism of Translational Repression in Stress

(2013) Andreas Czech et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Small interfering RNA-producing loci in the ancient parasitic eukaryote Trypanosoma brucei

(2012) Christian Tschudi et al.   BMC GENOMICS

Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis

(2012) Marek Zywicki et al.   NUCLEIC ACIDS RESEARCH

tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA inHaloferax volcanii

(2012) Jennifer Gebetsberger et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Generation of chemically engineered ribosomes for atomic mutagenesis studies on protein biosynthesis

(2011) Matthias D Erlacher et al.   Nature Protocols

The Short Non-Coding Transcriptome of the Protozoan Parasite Trypanosoma cruzi

(2011) Oscar Franzén et al.   PLoS Neglected Tropical Diseases

The Pre-mRNA Splicing Machinery of Trypanosomes: Complex or Simplified?

(2010) Arthur Günzl   EUKARYOTIC CELL

Angiogenin-induced tRNA-derived Stress-induced RNAs Promote Stress-induced Stress Granule Assembly

(2010) Mohamed M. Emara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A population of tRNA-derived small RNAs is actively produced in Trypanosoma cruzi and recruited to specific cytoplasmic granules

(2010) Maria Rosa Garcia-Silva et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Human tRNA-derived small RNAs in the global regulation of RNA silencing

(2010) D. Haussecker et al.   RNA

Evidence for human microRNA-offset RNAs in small RNA sequencing data

(2009) D. Langenberger et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress inSaccharomyces cerevisiae

(2009) Debrah M. Thompson et al.   JOURNAL OF CELL BIOLOGY

Angiogenin cleaves tRNA and promotes stress-induced translational repression

(2009) Satoshi Yamasaki et al.   JOURNAL OF CELL BIOLOGY

TriTrypDB: a functional genomic resource for the Trypanosomatidae

(2009) Martin Aslett et al.   NUCLEIC ACIDS RESEARCH

Stress induces tRNA cleavage by angiogenin in mammalian cells

(2008) Hanjiang Fu et al.   FEBS LETTERS

Heat shock causes a decrease in polysomes and the appearance of stress granules in trypanosomes independently of eIF2  phosphorylation at Thr169

(2008) S. Kramer et al.   JOURNAL OF CELL SCIENCE

tRNA cleavage is a conserved response to oxidative stress in eukaryotes

(2008) D. M. Thompson et al.   RNA