Comparative transcriptomes and development of expressed sequence tag-simple sequence repeat markers for two closely related oak species

Genome-wide Association Study Reveals that the Aquaporin NIP1;1 Contributes to Variation in Hydrogen Peroxide Sensitivity in Arabidopsis thaliana

(2017) Ayan Sadhukhan et al.   Molecular Plant

E3 Ubiquitin Ligases: Ubiquitous Actors in Plant Development and Abiotic Stress Responses

(2017) Kai Shu et al.   PLANT AND CELL PHYSIOLOGY

Population genetic differentiation of the black rockfish Sebastes schlegelii revealed by microsatellites

(2016) Tianxiang Gao et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Comparative RNA-Seq profiling of berry development between table grape ‘Kyoho’ and its early-ripening mutant ’Fengzao’

(2016) Da-Long Guo et al.   BMC GENOMICS

Transcriptome Sequencing and Development of Genic SSR Markers of an Endangered Chinese Endemic Genus Dipteronia Oliver (Aceraceae)

(2016) Tao Zhou et al.   MOLECULES

AsHSP17, a creeping bentgrass small heat shock protein modulates plant photosynthesis and ABA-dependent and independent signalling to attenuate plant response to abiotic stress

(2016) Xinbo Sun et al.   PLANT CELL AND ENVIRONMENT

De novo transcriptome assembly and development of SSR markers of oaks Quercus austrocochinchinensis and Q. kerrii (Fagaceae)

(2016) Miao An et al.   Tree Genetics & Genomes

Phylogeography and evolution of two closely related oak species (Quercus) from north and northeast China

(2016) Jia Yang et al.   Tree Genetics & Genomes

Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.)

(2016) Pallavi Sinha et al.   Frontiers in Plant Science

Development and characterisation of EST-SSR markers by transcriptome sequencing in taro (Colocasia esculenta (L.) Schoot)

(2015) Yongning You et al.   MOLECULAR BREEDING

De novo Assembly and Characterization of the Testis Transcriptome and Development of EST-SSR Markers in the Cockroach Periplaneta americana

(2015) Wan Chen et al.   Scientific Reports

Mechanisms on Boron-Induced Alleviation of Aluminum-Toxicity in Citrus grandis Seedlings at a Transcriptional Level Revealed by cDNA-AFLP Analysis

(2015) Xin-Xing Zhou et al.   PLoS One

Characterization and cross-species transferability of EST–SSR markers developed from the transcriptome of Dysosma versipellis (Berberidaceae) and their application to population genetic studies

(2014) Rui Guo et al.   MOLECULAR BREEDING

Taxonomically restricted genes of Craterostigma plantagineum are modulated in their expression during dehydration and rehydration

(2014) Valentino Giarola et al.   PLANTA

Development and Characterization of Simple Sequence Repeat (SSR) Markers Based on RNA-Sequencing of Medicago sativa and In silico Mapping onto the M. truncatula Genome

(2014) Zan Wang et al.   PLoS One

Multiple nuclear genes stabilize the phylogenetic backbone of the genusQuercus

(2014) François Hubert et al.   SYSTEMATICS AND BIODIVERSITY

Microsatellite Primer Development for Post Oak,Quercus stellata(Fagaceae)

(2014) Warren B. Chatwin et al.   Applications in Plant Sciences

Dimethyl Adenosine Transferase (KsgA) Deficiency in Salmonella enterica Serovar Enteritidis Confers Susceptibility to High Osmolarity and Virulence Attenuation in Chickens

(2013) Kim Lam Chiok et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative transcriptome analysis and marker development of two closely related Primrose species (Primula poissonii and Primula wilsonii)

(2013) Lu Zhang et al.   BMC GENOMICS

Characterization and high cross-species transferability of microsatellite markers from the floral transcriptome ofAspidistra saxicola(Asparagaceae)

(2013) Danni Huang et al.   Molecular Ecology Resources

De Novo Assembly, Gene Annotation and Marker Development Using Illumina Paired-End Transcriptome Sequences in Celery (Apium graveolens L.)

(2013) Nan Fu et al.   PLoS One

Rapidly Evolving Genes and Stress Adaptation of Two Desert Poplars, Populus euphratica and P. pruinosa

(2013) Jian Zhang et al.   PLoS One

De Novo Assembly and Characterization of the Transcriptome, and Development of SSR Markers in Wax Gourd (Benicasa hispida)

(2013) Biao Jiang et al.   PLoS One

Characterization and Expression of a GDSL-Like Lipase Gene from Brassica napus in Nicotiana benthamiana

(2013) Xiaoli Tan et al.   PROTEIN JOURNAL

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

De novo assembly and Characterisation of the Transcriptome during seed development, and generation of genic-SSR markers in Peanut (Arachis hypogaea L.)

(2012) Jianan Zhang et al.   BMC GENOMICS

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

(2011) Juan E. Zalapa et al.   AMERICAN JOURNAL OF BOTANY

The plant heat stress transcription factor (Hsf) family: Structure, function and evolution

(2011) Klaus-Dieter Scharf et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

(2011) Shaogui Guo et al.   BMC GENOMICS

Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

(2011) Sukhjiwan Kaur et al.   BMC GENOMICS

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

(2011) Maria D Logacheva et al.   BMC GENOMICS

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

(2011) Wenliang Wei et al.   BMC GENOMICS

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

(2011) Sutapa Dutta et al.   BMC PLANT BIOLOGY

Phylogeography and climatic niche evolution in live oaks (Quercus series Virentes) from the tropics to the temperate zone

(2011) Jeannine Cavender-Bares et al.   JOURNAL OF BIOGEOGRAPHY

Transcriptome sequencing of a highly salt tolerant mangrove species Sonneratia alba using Illumina platform

(2011) Sufang Chen et al.   Marine Genomics

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Orchardgrass (Dactylis glomerata L.) EST and SSR marker development, annotation, and transferability

(2011) B. Shaun Bushman et al.   THEORETICAL AND APPLIED GENETICS

Development of 61 new transcriptome-derived microsatellites for the Atlantic herring (Clupea harengus)

(2011) A. G. F. Teacher et al.   Conservation Genetics Resources

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

EST-derived SSR markers in Jatropha curcas L.: development, characterization, polymorphism, and transferability across the species/genera

(2010) Hemant Kumar Yadav et al.   Tree Genetics & Genomes

Estimating Divergence Parameters With Small Samples From a Large Number of Loci

(2009) Y. Wang et al.   GENETICS

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

Microsatellite markers derived from Quercus mongolica var. crispula (Fagaceae) inner bark expressed sequence tags

(2008) Saneyoshi Ueno et al.   GENES & GENETIC SYSTEMS

Comparative genomics and the study of evolution by natural selection

(2008) HANS ELLEGREN   MOLECULAR ECOLOGY

C1 metabolism and chlorophyll synthesis: the Mg-protoporphyrin IX methyltransferase activity is dependent on the folate status

(2008) Valérie Van Wilder et al.   NEW PHYTOLOGIST

Sequencing breakthroughs for genomic ecology and evolutionary biology

(2007) MATTHEW E. HUDSON   Molecular Ecology Resources