New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11

Evaluation of composition and individual variability of rumen microbiota in yaks by 16S rRNA high-throughput sequencing technology

(2015) Wei Guo et al.   ANAEROBE

NECROPSY FINDINGS IN 62 OPPORTUNISTICALLY COLLECTED FREE-RANGING MOOSE (ALCES ALCES) FROM MINNESOTA, USA (2003–13)

(2015) Arno Wünschmann et al.   JOURNAL OF WILDLIFE DISEASES

Classifying the uncultivated microbial majority: A place for metagenomic data in the Candidatus proposal

(2015) Konstantinos T. Konstantinidis et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

In-depth diversity analysis of the bacterial community resident in the camel rumen

(2015) Javad Gharechahi et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Structural insights into bacterial recognition of intestinal mucins

(2014) Sabrina Etzold et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes

(2014) Carly P. Rosewarne et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

High-Throughput DNA Sequencing of the Ruminal Bacteria from Moose (Alces alces) in Vermont, Alaska, and Norway

(2014) Suzanne L. Ishaq et al.   MICROBIAL ECOLOGY

Relationship between the Rumen Microbiome and Residual Feed Intake-Efficiency of Brahman Bulls Stocked on Bermudagrass Pastures

(2014) Joshua C. McCann et al.   PLoS One

Diversity of Rumen Bacteria in Canadian Cervids

(2014) Robert J. Gruninger et al.   PLoS One

MS-GF+ makes progress towards a universal database search tool for proteomics

(2014) Sangtae Kim et al.   Nature Communications

Determining the culturability of the rumen bacterial microbiome

(2014) Christopher J. Creevey et al.   Microbial Biotechnology

Bacterial chitinases and chitin-binding proteins as virulence factors

(2013) R. F. Frederiksen et al.   MICROBIOLOGY-SGM

Combination treatment of elevated UVB radiation, CO2and temperature has little effect on silver birch (Betula pendula) growth and phytochemistry

(2013) Anu Lavola et al.   PHYSIOLOGIA PLANTARUM

SSuMMo: rapid analysis, comparison and visualization of microbial communities

(2012) Alex L. B. Leach et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Effects of Warming on Shrub Abundance and Chemistry Drive Ecosystem-Level Changes in a Forest–Tundra Ecotone

(2012) Elina Kaarlejärvi et al.   ECOSYSTEMS

Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization

(2012) I. Sharon et al.   GENOME RESEARCH

Gliding Motility and Por Secretion System Genes Are Widespread among Members of the Phylum Bacteroidetes

(2012) Mark J. McBride et al.   JOURNAL OF BACTERIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci

(2012) Phillip B. Pope et al.   PLoS One

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Activity-Based Metagenomic Screening and Biochemical Characterization of Bovine Ruminal Protozoan Glycoside Hydrolases

(2011) Seth D. Findley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Hemicelluloses

(2010) Henrik Vibe Scheller et al.   Annual Review of Plant Biology

The impact of tannins on protein, dry matter, and energy digestion in moose (Alces alces)

(2010) D. E. Spalinger et al.   CANADIAN JOURNAL OF ZOOLOGY

Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages

(2010) Yunhong Kong et al.   FEMS MICROBIOLOGY ECOLOGY

Xylan degradation, a metabolic property shared by rumen and human colonic Bacteroidetes

(2010) Dylan Dodd et al.   MOLECULAR MICROBIOLOGY

The Glycobiome of the Rumen Bacterium Butyrivibrio proteoclasticus B316T Highlights Adaptation to a Polysaccharide-Rich Environment

(2010) William J. Kelly et al.   PLoS One

Bacterial Na+-translocating ferredoxin:NAD+ oxidoreductase

(2010) E. Biegel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Summer dietary nitrogen availability as a potential bottom-up constraint on moose in south-central Alaska

(2009) Scott H. McArt et al.   ECOLOGY

The Iron-Hydrogenase of Thermotoga maritima Utilizes Ferredoxin and NADH Synergistically: a New Perspective on Anaerobic Hydrogen Production

(2009) G. J. Schut et al.   JOURNAL OF BACTERIOLOGY

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic analysis of hindgut microbiota in Hokkaido native horses compared to light horses

(2008) Hidehisa YAMANO et al.   ANIMAL SCIENCE JOURNAL

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

A simple, fast, and accurate method of phylogenomic inference

(2008) Martin Wu et al.   GENOME BIOLOGY