Analysis of Pseudomonas putida growth on non-trivial carbon sources using transcriptomics and genome-scale modelling

Influence of the Crc regulator on the hierarchical use of carbon sources from a complete medium in P seudomonas

(2016) Ruggero La Rosa et al.   ENVIRONMENTAL MICROBIOLOGY

Genome-wide mapping of transcription start sites yields novel insights into the primary transcriptome of Pseudomonas putida

(2016) Isotta D'Arrigo et al.   ENVIRONMENTAL MICROBIOLOGY

Global transcriptional response of solvent-sensitive and solvent-tolerantPseudomonas putidastrains exposed to toluene

(2016) Carlos Molina-Santiago et al.   ENVIRONMENTAL MICROBIOLOGY

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

(2016) Eugeni Belda et al.   ENVIRONMENTAL MICROBIOLOGY

Pseudomonas putida—a versatile host for the production of natural products

(2015) Anita Loeschcke et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism inPseudomonas putida

(2015) Ruggero La Rosa et al.   ENVIRONMENTAL MICROBIOLOGY

Pseudomonas putidaKT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways

(2015) Pablo I. Nikel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Role of the Outer Membrane Protein OprD2 in Carbapenem-Resistance Mechanisms of Pseudomonas aeruginosa

(2015) Jilu Shen et al.   PLoS One

The Functional Structure of Central Carbon Metabolism in Pseudomonas putida KT2440

(2014) Suresh Sudarsan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism

(2014) Daniel Machado et al.   PLoS Computational Biology

Genetic engineering of Pseudomonas putida KT2440 for rapid and high-yield production of vanillin from ferulic acid

(2013) Nadja Graf et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metabolic and regulatory rearrangements underlying glycerol metabolism inPseudomonas putida KT2440

(2013) Pablo I. Nikel et al.   ENVIRONMENTAL MICROBIOLOGY

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

(2013) D. McCloskey et al.   Molecular Systems Biology

DOOR 2.0: presenting operons and their functions through dynamic and integrated views

(2013) Xizeng Mao et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic fingerprinting ofPseudomonas putidaunder alternative physiological regimes

(2013) Juhyun Kim et al.   Environmental Microbiology Reports

Industrial biotechnology of Pseudomonas putida and related species

(2012) Ignacio Poblete-Castro et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Entner-Doudoroff pathway empowersPseudomonas putida KT2440 with a high tolerance to oxidative stress

(2012) Max Chavarría et al.   ENVIRONMENTAL MICROBIOLOGY

Structure and function of OprD protein in Pseudomonas aeruginosa: From antibiotic resistance to novel therapies

(2012) Hui Li et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Mechanisms of Resistance to Chloramphenicol in Pseudomonas putida KT2440

(2011) Matilde Fernández et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics

(2011) Sarah Frank et al.   ENVIRONMENTAL MICROBIOLOGY

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis

(2011) Matthew A. Oberhardt et al.   PLoS Computational Biology

In silicogenome-scale metabolic analysis ofPseudomonas putidaKT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival

(2010) Seung Bum Sohn et al.   Biotechnology Journal

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

(2010) Nathan E Lewis et al.   Molecular Systems Biology

Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 Å resolution

(2010) Parthasarathy Sampathkumar et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Detection of a gem-diamine and a stable quinonoid intermediate in the reaction catalyzed by serine–glyoxylate aminotransferase from Hyphomicrobium methylovorum

(2009) William E. Karsten et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Citrate Utilization by Corynebacterium glutamicum Is Controlled by the CitAB Two-Component System through Positive Regulation of the Citrate Transport Genes citH and tctCBA

(2009) M. Brocker et al.   JOURNAL OF BACTERIOLOGY

ThePseudomonas putidaCrc global regulator controls the hierarchical assimilation of amino acids in a complete medium: Evidence from proteomic and genomic analyses

(2009) Renata Moreno et al.   PROTEOMICS

Regulation of ferulic catabolic genes in Pseudomonas fluorescens BF13: involvement of a MarR family regulator

(2008) C. Calisti et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Functional Analyses ofPseudomonas putidaBenzoate Transporters Expressed in the YeastSaccharomyces cerevisiae

(2008) Yoshitsugu NISHIKAWA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

(2008) Juan Nogales et al.   BMC Systems Biology

Functional Characterization and Metal Ion Specificity of the Metal-Citrate Complex Transporter from Streptomyces coelicolor

(2008) J. J. Lensbouer et al.   JOURNAL OF BACTERIOLOGY

A Set of Activators and Repressors Control Peripheral Glucose Pathways in Pseudomonas putida To Yield a Common Central Intermediate

(2008) T. del Castillo et al.   JOURNAL OF BACTERIOLOGY

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

(2008) Jacek Puchałka et al.   PLoS Computational Biology

Context-Specific Metabolic Networks Are Consistent with Experiments

(2008) Scott A. Becker et al.   PLoS Computational Biology