Transcriptome sequencing and EST-SSR marker development in Salix babylonica and S. suchowensis

Gene discovery and marker resource development by transcriptome sequencing from a short-rotation coppice willow,Salix suchowensis

(2017) Xiaogang Dai et al.   PLANT BREEDING

Genetic structure of dioecious and trioecious Salix myrsinifolia populations at the border of geographic range

(2017) P. Mirski et al.   Tree Genetics & Genomes

Selection of suitable reference genes for quantitative real-time PCR gene expression analysis in Salix matsudana under different abiotic stresses

(2017) Yunxing Zhang et al.   Scientific Reports

De novo transcriptome assembly and development of SSR markers of oaks Quercus austrocochinchinensis and Q. kerrii (Fagaceae)

(2016) Miao An et al.   Tree Genetics & Genomes

De novo transcriptome analysis reveals tissue-specific differences in gene expression in Salix arbutifolia

(2016) Guodong Rao et al.   TREES-STRUCTURE AND FUNCTION

Transcriptome Sequencing and Expression Analysis of Cadmium (Cd) Transport and Detoxification Related Genes in Cd-Accumulating Salix integra

(2016) Xiang Shi et al.   Frontiers in Plant Science

Genome-wide identification and characterization of WRKY gene family inSalix suchowensis

(2016) Changwei Bi et al.   PeerJ

A High-Density Genetic Map of Tetraploid Salix matsudana Using Specific Length Amplified Fragment Sequencing (SLAF-seq)

(2016) Jian Zhang et al.   PLoS One

De novo transcriptome assembly, development of EST-SSR markers and population genetic analyses for the desert biomass willow, Salix psammophila

(2016) Huixia Jia et al.   Scientific Reports

Association mapping inSalix viminalisL. (Salicaceae) - identification of candidate genes associated with growth and phenology

(2015) Henrik R. Hallingbäck et al.   Global Change Biology Bioenergy

Genetic relationships and ecological divergence in Salix species and populations in Taiwan

(2015) Chun-Lin Huang et al.   Tree Genetics & Genomes

RNA-Seq analysis for transcriptome assembly, gene identification, and SSR mining in ginkgo (Ginkgo biloba L.)

(2015) Shiming Han et al.   Tree Genetics & Genomes

Characterization of 23 Polymorphic SSR Markers in Salix humboldtiana (Salicaceae) Using Next-Generation Sequencing and Cross-Amplification from Related Species

(2015) Jorge A. Bozzi et al.   Applications in Plant Sciences

Phylogenetic Relationships of American Willows (Salix L., Salicaceae)

(2015) Aurélien Lauron-Moreau et al.   PLoS One

Early selection of novel triploid hybrids of shrub willow with improved biomass yield relative to diploids

(2014) Michelle J Serapiglia et al.   BMC PLANT BIOLOGY

Genetic architecture of spring and autumn phenology in Salix

(2014) Luisa Ghelardini et al.   BMC PLANT BIOLOGY

The willow genome and divergent evolution from poplar after the common genome duplication

(2014) Xiaogang Dai et al.   CELL RESEARCH

De novo transcriptome analysis of the Siberian apricot (Prunus sibirica L.) and search for potential SSR markers by 454 pyrosequencing

(2014) Shubin Dong et al.   GENE

De Novo Transcriptome and Small RNA Analysis of Two Chinese Willow Cultivars Reveals Stress Response Genes in Salix matsudana

(2014) Guodong Rao et al.   PLoS One

Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae)

(2014) S. Berlin et al.   Tree Genetics & Genomes

De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba

(2013) Susana L Torales et al.   BMC GENOMICS

De Novo Assembly and Functional Annotation of the Olive (Olea europaea) Transcriptome

(2013) A. Munoz-Merida et al.   DNA RESEARCH

Development of 240 novel EST-SSRs in Eucalyptus L’Hérit

(2013) Changpin Zhou et al.   MOLECULAR BREEDING

Transcriptome Analysis of the Differentially Expressed Genes in the Male and Female Shrub Willows (Salix suchowensis)

(2013) Jingjing Liu et al.   PLoS One

Exploiting the Transcriptome of Euphrates Poplar, Populus euphratica (Salicaceae) to Develop and Characterize New EST-SSR Markers and Construct an EST-SSR Database

(2013) Fang K. Du et al.   PLoS One

Genetic strategies for dissecting complex traits in biomass willows (Salix spp.)

(2013) S. J. Hanley et al.   TREE PHYSIOLOGY

Genomic insights into salt adaptation in a desert poplar

(2013) Tao Ma et al.   Nature Communications

Development of 198 novel EST-derived microsatellites in Eucalyptus (Myrtaceae)

(2012) Xudong He et al.   AMERICAN JOURNAL OF BOTANY

De novo characterization of the Chinese fir (Cunninghamia lanceolata) transcriptome and analysis of candidate genes involved in cellulose and lignin biosynthesis

(2012) Hua-Hong Huang et al.   BMC GENOMICS

Revisiting the sequencing of the first tree genome: Populus trichocarpa

(2012) S. D. Wullschleger et al.   TREE PHYSIOLOGY

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

(2011) Juan E. Zalapa et al.   AMERICAN JOURNAL OF BOTANY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis

(2011) Zhihui Xia et al.   PLANT MOLECULAR BIOLOGY

Genome-scale transcriptome analysis of the desert poplar, Populus euphratica

(2011) Q. Qiu et al.   TREE PHYSIOLOGY

High-density linkage mapping and evolution of paralogs and orthologs in Salix and Populus

(2010) Sofia Berlin et al.   BMC GENOMICS

Microsatellite markers: an overview of the recent progress in plants

(2010) Rajwant K. Kalia et al.   EUPHYTICA

Development and bin mapping of strawberry genic-SSRs in diploid Fragaria and their transferability across the Rosoideae subfamily

(2010) Yasmín Zorrilla-Fontanesi et al.   MOLECULAR BREEDING

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Differentiation of metallicolous and non-metallicolous Salix caprea populations based on phenotypic characteristics and nuclear microsatellite (SSR) markers

(2010) MARKUS PUSCHENREITER et al.   PLANT CELL AND ENVIRONMENT

EST-derived SSR markers in Jatropha curcas L.: development, characterization, polymorphism, and transferability across the species/genera

(2010) Hemant Kumar Yadav et al.   Tree Genetics & Genomes

Applications of New Sequencing Technologies for Transcriptome Analysis

(2009) Olena Morozova et al.   Annual Review of Genomics and Human Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

Characteristics and transferability of new apple EST-derived SSRs to other Rosaceae species

(2008) Ksenija Gasic et al.   MOLECULAR BREEDING

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS