Metabarcoding targeting the EF1 alpha region to assess Fusarium diversity on cereals

Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing

(2016) D. Lee Taylor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Updated survey of Fusarium species and toxins in Finnish cereal grains

(2016) Veli Hietaniemi et al.   Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment

Genus-Specific Primers for Study of Fusarium Communities in Field Samples

(2015) Ida Karlsson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Host genotype is an important determinant of the cereal phyllosphere mycobiome

(2015) Rumakanta Sapkota et al.   NEW PHYTOLOGIST

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Soil Fungal Communities Respond to Grassland Plant Community Richness and Soil Edaphics

(2014) Nicholas LeBlanc et al.   MICROBIAL ECOLOGY

Microbial Community Diversities and Taxa Abundances in Soils along a Seven-Year Gradient of Potato Monoculture Using High Throughput Pyrosequencing Approach

(2014) Xing Liu et al.   PLoS One

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of the Fusarium graminearum species complex on French cereals

(2013) Anne-Laure Boutigny et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Fusarium species and DON contamination associated with head blight in winter wheat over a 7-year period (2003–2009) in Belgium

(2011) Anne Chandelier et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa

(2011) Yonathan Arfi et al.   FEMS MICROBIOLOGY ECOLOGY

Fusarium sibiricum sp. nov, a novel type A trichothecene-producing Fusarium from northern Asia closely related to F. sporotrichioides and F. langsethiae

(2011) Tapani Yli-Mattila et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Fusarium Head Blight of Cereals in Denmark: Species Complex and Related Mycotoxins

(2011) L. K. Nielsen et al.   PHYTOPATHOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

An open source chimera checker for the fungal ITS region

(2010) R. H. NILSSON et al.   Molecular Ecology Resources

Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments

(2010) A. Jumpponen et al.   NEW PHYTOLOGIST

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fusarium head blight (FHB) in Flanders: population diversity, inter-species associations and DON contamination in commercial winter wheat varieties

(2009) K. Audenaert et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

(2009) Rolf Henrik Nilsson et al.   FEMS MICROBIOLOGY LETTERS

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Multilocus genotyping and molecular phylogenetics resolve a novel head blight pathogen within the Fusarium graminearum species complex from Ethiopia

(2008) Kerry O’Donnell et al.   FUNGAL GENETICS AND BIOLOGY

Real-time PCR for quantification of eleven individual Fusarium species in cereals

(2008) Mogens Nicolaisen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

Relationship Between the Fungal Complex Causing Fusarium Head Blight of Wheat and Environmental Conditions

(2007) X.-M. Xu et al.   PHYTOPATHOLOGY