Increased DNA methylation of SLFN12 in CD4+ and CD8+ T cells from multiple sclerosis patients

Schlafen-8 is essential for lymphatic endothelial cell activation in experimental autoimmune encephalomyelitis

(2018) Katsuhiro Nakagawa et al.   INTERNATIONAL IMMUNOLOGY

Effector T Cells in Multiple Sclerosis

(2018) Belinda J. Kaskow et al.   Cold Spring Harbor Perspectives in Medicine

Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1

(2017) Vicki E. Maltby et al.   Clinical Epigenetics

Smoking induces DNA methylation changes in Multiple Sclerosis patients with exposure-response relationship

(2017) Francesco Marabita et al.   Scientific Reports

Repetitive element hypermethylation in multiple sclerosis patients

(2016) K. Y. Neven et al.   BMC GENETICS

The critical role of epigenetics in systemic lupus erythematosus and autoimmunity

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The transcriptional coregulator MAML1 affects DNA methylation and gene expression patterns in human embryonic kidney cells

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Epigenome-wide association study of body mass index and the adverse outcomes of adiposity

(2016) Simone Wahl et al.   NATURE

Next-generation genotype imputation service and methods

(2016) Sayantan Das et al.   NATURE GENETICS

Practical impacts of genomic data “cleaning” on biological discovery using surrogate variable analysis

(2015) Andrew E. Jaffe et al.   BMC BIOINFORMATICS

Human body epigenome maps reveal noncanonical DNA methylation variation

(2015) Matthew D. Schultz et al.   NATURE

limma powers differential expression analyses for RNA-sequencing and microarray studies

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Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis

(2015) Zhifu Sun et al.   Epigenomics

Genome-wide DNA methylation profiling of CD8+ T cells shows a distinct epigenetic signature to CD4+ T cells in multiple sclerosis patients

(2015) Vicki E. Maltby et al.   Clinical Epigenetics

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

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Genome-Wide DNA Methylation as an Epigenetic Consequence of Epstein-Barr Virus Infection of Immortalized Keratinocytes

(2014) C. E. Birdwell et al.   JOURNAL OF VIROLOGY

Multiple sclerosis genetics

(2014) Stephen Sawcer et al.   LANCET NEUROLOGY

Network-Based Multiple Sclerosis Pathway Analysis with GWAS Data from 15,000 Cases and 30,000 Controls

(2013) Sergio E. Baranzini et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Schlafen Family of Proteins and Their Regulation by Interferons

(2013) Evangelos Mavrommatis et al.   JOURNAL OF INTERFERON AND CYTOKINE RESEARCH

Methylation differences at the HLA-DRB1 locus in CD4+ T-Cells are associated with multiple sclerosis

(2013) MC Graves et al.   Multiple Sclerosis Journal

Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis

(2013) Ashley H Beecham et al.   NATURE GENETICS

Epigenetic Landscape of Parkinson’s Disease: Emerging Role in Disease Mechanisms and Therapeutic Modalities

(2013) Navneet Ammal Kaidery et al.   Neurotherapeutics

Aberrant Methylation of Gene Associated CpG Sites Occurs in Borderline Personality Disorder

(2013) Stefanie Teschler et al.   PLoS One

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies

(2012) Andrew E Jaffe et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Placebo-Controlled Phase 3 Study of Oral BG-12 or Glatiramer in Multiple Sclerosis

(2012) Robert J. Fox et al.   NEW ENGLAND JOURNAL OF MEDICINE

Placebo-Controlled Phase 3 Study of Oral BG-12 for Relapsing Multiple Sclerosis

(2012) Ralf Gold et al.   NEW ENGLAND JOURNAL OF MEDICINE

Pathogenic CD8 T Cells in Multiple Sclerosis and Its Experimental Models

(2012) Eric S. Huseby et al.   Frontiers in Immunology

Diagnostic criteria for multiple sclerosis: 2010 Revisions to the McDonald criteria

(2011) Chris H. Polman et al.   ANNALS OF NEUROLOGY

Strategies for aggregating gene expression data: The collapseRows R function

(2011) Jeremy A Miller et al.   BMC BIOINFORMATICS

Methylation-dependent PAD2 upregulation in multiple sclerosis peripheral blood

(2011) Roberta Calabrese et al.   Multiple Sclerosis Journal

Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis

(2011) Stephen Sawcer et al.   NATURE

A Two-Stage Meta-Analysis Identifies Several New Loci for Parkinson's Disease

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Asymptotic Conditional Singular Value Decomposition for High-Dimensional Genomic Data

(2010) Jeffrey T. Leek   BIOMETRICS

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

(2010) Yun Li et al.   GENETIC EPIDEMIOLOGY

Profiling of CD4+ T Cells with Epigenetic Immune Lineage Analysis

(2010) P. C. J. Janson et al.   JOURNAL OF IMMUNOLOGY

No evidence for an effect of DNA methylation on multiple sclerosis severity at HLA-DRB1*15 or HLA-DRB5

(2010) Adam E. Handel et al.   JOURNAL OF NEUROIMMUNOLOGY

Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis

(2010) Sergio E. Baranzini et al.   NATURE