Exome and Transcriptome Sequencing of Aedes aegypti Identifies a Locus That Confers Resistance to Brugia malayi and Alters the Immune Response

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Genomic composition and evolution of Aedes aegypti chromosomes revealed by the analysis of physically mapped supercontigs

(2014) Vladimir A Timoshevskiy et al.   BMC BIOLOGY

Assembly of the Genome of the Disease Vector Aedes aegypti onto a Genetic Linkage Map Allows Mapping of Genes Affecting Disease Transmission

(2014) Punita Juneja et al.   PLoS Neglected Tropical Diseases

Dual RNA-seq of Parasite and Host Reveals Gene Expression Dynamics during Filarial Worm–Mosquito Interactions

(2014) Young-Jun Choi et al.   PLoS Neglected Tropical Diseases

Genetic Dissection of Anopheles gambiae Gut Epithelial Responses to Serratia marcescens

(2014) Stavros Stathopoulos et al.   PLoS Pathogens

Aedes aegypti ML and Niemann-Pick type C family members are agonists of dengue virus infection

(2013) Natapong Jupatanakul et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Genomic, RNAseq, and Molecular Modeling Evidence Suggests That the Major Allergen Domain in Insects Evolved from a Homodimeric Origin

(2013) Thomas A. Randall et al.   Genome Biology and Evolution

Competition for Amino Acids Between Wolbachia and the Mosquito Host, Aedes aegypti

(2013) Eric P. Caragata et al.   MICROBIAL ECOLOGY

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Age-Dependent Effects of Oral Infection with Dengue Virus on Aedes aegypti (Diptera: Culicidae) Feeding Behavior, Survival, Oviposition Success and Fecundity

(2013) Gabriel Sylvestre et al.   PLoS One

An Integrated Linkage, Chromosome, and Genome Map for the Yellow Fever Mosquito Aedes aegypti

(2013) Vladimir A. Timoshevskiy et al.   PLoS Neglected Tropical Diseases

Non-Genetic Determinants of Mosquito Competence for Malaria Parasites

(2013) Thierry Lefèvre et al.   PLoS Pathogens

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Association Testing for Next-Generation Sequencing Data Using Score Statistics

(2012) Line Skotte et al.   GENETIC EPIDEMIOLOGY

Tissue-enriched expression profiles in Aedes aegypti identify hemocyte-specific transcriptome responses to infection

(2012) Young-Jun Choi et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Evolution, revolution and heresy in the genetics of infectious disease susceptibility

(2012) A. V. S. Hill   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome-Wide Association Studies Reveal a Simple Genetic Basis of Resistance to Naturally Coevolving Viruses in Drosophila melanogaster

(2012) Michael M. Magwire et al.   PLoS Genetics

The Relative Importance of Innate Immune Priming in Wolbachia-Mediated Dengue Interference

(2012) Edwige Rancès et al.   PLoS Pathogens

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Estimation of allele frequency and association mapping using next-generation sequencing data

(2011) Su Kim et al.   BMC BIOINFORMATICS

RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti

(2011) Mariangela Bonizzoni et al.   BMC GENOMICS

Nutritional and hormonal regulation of the TOR effector 4E-binding protein (4E-BP) in the mosquito Aedes aegypti

(2011) Saurabh G. Roy et al.   FASEB JOURNAL

Successful establishment of Wolbachia in Aedes populations to suppress dengue transmission

(2011) A. A. Hoffmann et al.   NATURE

Exome sequencing as a tool for Mendelian disease gene discovery

(2011) Michael J. Bamshad et al.   NATURE REVIEWS GENETICS

Insect immune responses to nematode parasites

(2011) Julio Cesar Castillo et al.   TRENDS IN PARASITOLOGY

Transcriptome Analysis of Aedes aegypti Transgenic Mosquitoes with Altered Immunity

(2011) Zhen Zou et al.   PLoS Pathogens

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Distinct Melanization Pathways in the Mosquito Aedes aegypti

(2010) Zhen Zou et al.   IMMUNITY

Expression profiling and comparative analyses of seven midgut serine proteases from the yellow fever mosquito, Aedes aegypti

(2010) Doug E. Brackney et al.   JOURNAL OF INSECT PHYSIOLOGY

Lymphatic filariasis and onchocerciasis

(2010) Mark J Taylor et al.   LANCET

Association Mapping of Insecticide Resistance in Wild Anopheles gambiae Populations: Major Variants Identified in a Low-Linkage Disequilbrium Genome

(2010) David Weetman et al.   PLoS One

Blocking of Plasmodium transmission by cooperative action of Cecropin A and Defensin A in transgenic Aedes aegypti mosquitoes

(2010) V. Kokoza et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Major Yolk Protein Vitellogenin Interferes with the Anti-Plasmodium Response in the Malaria Mosquito Anopheles gambiae

(2010) Martin K. Rono et al.   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

WolbachiaLipoprotein Stimulates Innate and Adaptive Immunity through Toll-like Receptors 2 and 6 to Induce Disease Manifestations of Filariasis

(2009) Joseph D. Turner et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of a blood-meal-responsive proton-dependent amino acid transporter in the disease vector, Aedes aegypti

(2009) A. M. Evans et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

An evolutionary conserved function of the JAK-STAT pathway in anti-dengue defense

(2009) J. A. Souza-Neto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Immune Activation by Life-Shortening Wolbachia and Reduced Filarial Competence in Mosquitoes

(2009) Z. Kambris et al.   SCIENCE

Mosquito Infection Responses to Developing Filarial Worms

(2009) Sara M. Erickson et al.   PLoS Neglected Tropical Diseases

Role of Vector Control in the Global Program to Eliminate Lymphatic Filariasis

(2008) Moses J. Bockarie et al.   Annual Review of Entomology

The genetic architecture of susceptibility to parasites

(2008) Lena Wilfert et al.   BMC EVOLUTIONARY BIOLOGY

VectorBase: a data resource for invertebrate vector genomics

(2008) D. Lawson et al.   NUCLEIC ACIDS RESEARCH