Comparative population genomics reveals key barriers to dispersal in Southern Ocean penguins

The challenges of detecting subtle population structure and its importance for the conservation of emperor penguins

(2017) Jane L. Younger et al.   MOLECULAR ECOLOGY

The K = 2 conundrum

(2017) Jasmine K. Janes et al.   MOLECULAR ECOLOGY

Marked phylogeographic structure of Gentoo penguin reveals an ongoing diversification process along the Southern Ocean

(2017) Juliana A. Vianna et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pan-Antarctic analysis aggregating spatial estimates of Adélie penguin abundance reveals robust dynamics despite stochastic noise

(2017) Christian Che-Castaldo et al.   Nature Communications

Rise and fall of Ross Sea emperor penguin colony populations: 2000 to 2012

(2016) G.L. Kooyman et al.   ANTARCTIC SCIENCE

Dispersal in the sub-Antarctic: king penguins show remarkably little population genetic differentiation across their range

(2016) Gemma V. Clucas et al.   BMC EVOLUTIONARY BIOLOGY

Integrated population modeling reveals the impact of climate on the survival of juvenile emperor penguins

(2016) Fitsum Abadi et al.   GLOBAL CHANGE BIOLOGY

Population genetic structure among feeding aggregations of humpback whales in the Southern Ocean

(2016) A. R. Amaral et al.   MARINE BIOLOGY

Conservation genomics of natural and managed populations: building a conceptual and practical framework

(2016) Laura Marilyn Benestan et al.   MOLECULAR ECOLOGY

Population structure and phylogeography of the Gentoo Penguin (Pygoscelis papua) across the Scotia Arc

(2016) Hila Levy et al.   Ecology and Evolution

Projected asymmetric response of Adélie penguins to Antarctic climate change

(2016) Megan A. Cimino et al.   Scientific Reports

Proliferation of East Antarctic Adélie penguins in response to historical deglaciation

(2015) Jane Younger et al.   BMC EVOLUTIONARY BIOLOGY

Too much of a good thing: sea ice extent may have forced emperor penguins into refugia during the last glacial maximum

(2015) Jane L. Younger et al.   GLOBAL CHANGE BIOLOGY

Defining the Anthropocene

(2015) Simon L. Lewis et al.   NATURE

Limited genetic differentiation among chinstrap penguin (Pygoscelis antarctica) colonies in the Scotia Arc and Western Antarctic Peninsula

(2015) Jennifer J. Freer et al.   POLAR BIOLOGY

Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies

(2015) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Spatial and isotopic niche partitioning during winter in chinstrap and Adélie penguins from the South Shetland Islands

(2015) Jefferson T. Hinke et al.   Ecosphere

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing

(2014) Serap Gonen et al.   BMC GENOMICS

Pollution, habitat loss, fishing, and climate change as critical threats to penguins

(2014) Phil N. Trathan et al.   CONSERVATION BIOLOGY

Emigration in emperor penguins: implications for interpretation of long-term studies

(2014) Michelle A. LaRue et al.   ECOGRAPHY

Mapping migration in a songbird using high-resolution genetic markers

(2014) Kristen C. Ruegg et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Emperor Penguins Breeding on Iceshelves

(2014) Peter T. Fretwell et al.   PLoS One

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Projected continent-wide declines of the emperor penguin under climate change

(2014) Stéphanie Jenouvrier et al.   Nature Climate Change

A reversal of fortunes: climate change ‘winners’ and ‘losers’ in Antarctic Peninsula penguins

(2014) Gemma V. Clucas et al.   Scientific Reports

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

(2014) Cai Li et al.   GigaScience

Three-dimensional use of marine habitats by juvenile emperor penguins Aptenodytes forsteri during post-natal dispersal

(2013) Jean-Baptiste Thiebot et al.   ANTARCTIC SCIENCE

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Continental-scale mapping of Adélie penguin colonies from Landsat imagery

(2013) Mathew R. Schwaller et al.   REMOTE SENSING OF ENVIRONMENT

Population development and historical occurrence of king penguins at the Falkland Islands

(2012) Pierre A. Pistorius et al.   ANTARCTIC SCIENCE

Seabird conservation status, threats and priority actions: a global assessment

(2012) JOHN P. CROXALL et al.   BIRD CONSERVATION INTERNATIONAL

The biogeography of Gentoo Penguins (Pygoscelis papua)

(2012) Marc de Dinechin et al.   CANADIAN JOURNAL OF ZOOLOGY

Spatially integrated assessment reveals widespread changes in penguin populations on the Antarctic Peninsula

(2012) Heather J. Lynch et al.   ECOLOGY

The Relationship Between FST and the Frequency of the Most Frequent Allele

(2012) M. Jakobsson et al.   GENETICS

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the programstructure

(2012) Kimberly J. Gilbert et al.   MOLECULAR ECOLOGY

An Emperor Penguin Population Estimate: The First Global, Synoptic Survey of a Species from Space

(2012) Peter T. Fretwell et al.   PLoS One

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

(2012) Eva-Maria Willing et al.   PLoS One

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Larger foraging range but similar habitat selection in non-breeding versus breeding sub-Antarctic penguins

(2011) Jean-Baptiste Thiebot et al.   ANTARCTIC SCIENCE

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Genetic variation and seasonal migratory connectivity in Wilson’s warblers (Wilsonia pusilla): species-level differences in nuclear DNA between western and eastern populations

(2011) DARREN E. IRWIN et al.   MOLECULAR ECOLOGY

Has the Earth’s sixth mass extinction already arrived?

(2011) Anthony D. Barnosky et al.   NATURE

First Recorded Loss of an Emperor Penguin Colony in the Recent Period of Antarctic Regional Warming: Implications for Other Colonies

(2011) Philip N. Trathan et al.   PLoS One

Assessing Significance in High-Throughput Experiments by Sequential Goodness of Fit and q-Value Estimation

(2011) Antonio Carvajal-Rodriguez et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

A quarter of a world away: female humpback whale moves 10 000 km between breeding areas

(2010) P. T. Stevick et al.   Biology Letters

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Maiden journey of fledgling emperor penguins from the Mawson Coast, East Antarctica

(2010) B Wienecke et al.   MARINE ECOLOGY PROGRESS SERIES

What can genetics tell us about population connectivity?

(2010) WINSOR H. LOWE et al.   MOLECULAR ECOLOGY

Post-breeding dispersal of Adélie penguins (Pygoscelis adeliae) nesting at Signy Island, South Orkney Islands

(2010) M. J. Dunn et al.   POLAR BIOLOGY

Survival differences and the effect of environmental instability on breeding dispersal in an Adelie penguin meta-population

(2010) K. M. Dugger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tipping back the balance: recolonization of the Macquarie Island isthmus by king penguins (Aptenodytes patagonicus) following extermination for human gain

(2009) John van den Hoff et al.   ANTARCTIC SCIENCE

The importance of oceanographic fronts to marine birds and mammals of the southern oceans

(2009) C.A. Bost et al.   JOURNAL OF MARINE SYSTEMS

Population structure in a highly pelagic seabird, the Cory’s shearwater Calonectris diomedea: an examination of genetics, morphology and ecology

(2009) E Gómez-Díaz et al.   MARINE ECOLOGY PROGRESS SERIES

Multilocus assignment analyses reveal multiple units and rare migration events in the recently expanded yellow-eyed penguin (Megadyptes antipodes)

(2009) SANNE BOESSENKOOL et al.   MOLECULAR ECOLOGY

Phylogeography and taxonomy of White-chinned and Spectacled Petrels

(2009) N.M.S. Mareile Techow et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Population Structure of Humpback Whales from Their Breeding Grounds in the South Atlantic and Indian Oceans

(2009) Howard C. Rosenbaum et al.   PLoS One

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

GEOGRAPHIC VARIATION IN GENTOO PENGUINS PYGOSCELIS PAPUA

(2008) Bernard Stonehouse   IBIS

Speciation chronology of rockhopper penguins inferred from molecular, geological and palaeoceanographic data

(2008) Marc de Dinechin et al.   JOURNAL OF BIOGEOGRAPHY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One