The challenges of peptidomics in complementing proteomics in a clinical context
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Title
The challenges of peptidomics in complementing proteomics in a clinical context
Authors
Keywords
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Journal
MASS SPECTROMETRY REVIEWS
Volume -, Issue -, Pages -
Publisher
Wiley
Online
2018-10-30
DOI
10.1002/mas.21581
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Note: Only part of the references are listed.- Comprehensive Peptide Analysis of Mouse Brain Striatum Identifies Novel sORF-Encoded Polypeptides
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- (2016) Mariusz Skwarczynski et al. Chemical Science
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- (2016) Anna Secher et al. Nature Communications
- Functional neuropeptidomics in invertebrates
- (2015) Wouter De Haes et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- The emerging role of the peptidome in biomarker discovery and degradome profiling
- (2015) Zon W. Lai et al. BIOLOGICAL CHEMISTRY
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- (2015) Chaochao Wu et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
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- (2015) Jelle Caers et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Novor: Real-Time Peptide de Novo Sequencing Software
- (2015) Bin Ma JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides
- (2015) Joel M Chick et al. NATURE BIOTECHNOLOGY
- MS2PIP prediction server: compute and visualize MS2peak intensity predictions for CID and HCD fragmentation
- (2015) Sven Degroeve et al. NUCLEIC ACIDS RESEARCH
- Current peptidomics: Applications, purification, identification, quantification, and functional analysis
- (2015) David C. Dallas et al. PROTEOMICS
- MS-GF+ makes progress towards a universal database search tool for proteomics
- (2014) Sangtae Kim et al. Nature Communications
- Site-Specific Characterization of d-Amino Acid Containing Peptide Epimers by Ion Mobility Spectrometry
- (2013) Chenxi Jia et al. ANALYTICAL CHEMISTRY
- PIUS: peptide identification by unbiased search
- (2013) Eduardo P. Costa et al. BIOINFORMATICS
- Peptidomics of Urine and Other Biofluids for Cancer Diagnostics
- (2013) J. M. Bauca et al. CLINICAL CHEMISTRY
- Quantitation of endogenous peptides using mass spectrometry based methods
- (2013) Elena V Romanova et al. CURRENT OPINION IN CHEMICAL BIOLOGY
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- (2013) Eisuke Hayakawa et al. JOURNAL OF PROTEOME RESEARCH
- Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance
- (2013) Mingxun Wang et al. JOURNAL OF PROTEOME RESEARCH
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- (2013) Craig D. Wenger et al. JOURNAL OF PROTEOME RESEARCH
- Proteogenomic Database Construction Driven from Large Scale RNA-seq Data
- (2013) Sunghee Woo et al. JOURNAL OF PROTEOME RESEARCH
- Combining Results of Multiple Search Engines in Proteomics
- (2013) David Shteynberg et al. MOLECULAR & CELLULAR PROTEOMICS
- False discovery rates in spectral identification
- (2012) Kyowon Jeong et al. BMC BIOINFORMATICS
- Peptidomics The Comprehensive Analysis of Peptides in Complex Biological Mixtures
- (2012) Peter Schulz-Knappe et al. COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING
- Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics
- (2012) Mohamed Helmy et al. GENES TO CELLS
- Peptidomic analysis of human reflex tear fluid
- (2012) Eisuke Hayakawa et al. PEPTIDES
- PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites
- (2012) Jiangning Song et al. PLoS One
- Evaluation of different extraction procedures for salivary peptide analysis
- (2012) Rui Vitorino et al. TALANTA
- Assessment of an ad hoc procedure for isolation and characterization of human albuminome
- (2011) Domenica Scumaci et al. ANALYTICAL BIOCHEMISTRY
- Ultrasensitive Identification of Localization Variants of Modified Peptides Using Ion Mobility Spectrometry
- (2011) Yehia M. Ibrahim et al. ANALYTICAL CHEMISTRY
- NeuroPedia: neuropeptide database and spectral library
- (2011) Yoona Kim et al. BIOINFORMATICS
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery
- (2011) Ebbing P. de Jong et al. CLINICA CHIMICA ACTA
- Analysis of the Resolution Limitations of Peptide Identification Algorithms
- (2011) Niklaas Colaert et al. JOURNAL OF PROTEOME RESEARCH
- MSblender: A Probabilistic Approach for Integrating Peptide Identifications from Multiple Database Search Engines
- (2011) Taejoon Kwon et al. JOURNAL OF PROTEOME RESEARCH
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- (2011) Xi Han et al. JOURNAL OF PROTEOME RESEARCH
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- (2011) Yufeng Shen et al. JOURNAL OF PROTEOME RESEARCH
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- (2011) Nitin Gupta et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Ion mobility mass spectrometry for peptide analysis
- (2011) Sophie R. Harvey et al. METHODS
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- (2011) Jing Zhang et al. MOLECULAR & CELLULAR PROTEOMICS
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- (2010) Surendra Dasari et al. JOURNAL OF PROTEOME RESEARCH
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- Proteogenomics
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- PTMap—A sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites
- (2009) Yue Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate
- (2009) Gerben Menschaert et al. PROTEOMICS
- Unrestricted identification of modified proteins using MS/MS
- (2009) Erik Ahrné et al. PROTEOMICS
- Sequential Interval Motif Search: Unrestricted Database Surveys of Global MS/MS Data Sets for Detection of Putative Post-Translational Modifications
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- (2008) Yuan-Qing Xia et al. ANALYTICAL CHEMISTRY
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- Peptidomics: The integrated approach of MS, hyphenated techniques and bioinformatics for neuropeptide analysis
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- Building consensus spectral libraries for peptide identification in proteomics
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- Semisupervised Model-Based Validation of Peptide Identifications in Mass Spectrometry-Based Proteomics
- (2007) Hyungwon Choi et al. JOURNAL OF PROTEOME RESEARCH
- Posterior Error Probabilities and False Discovery Rates: Two Sides of the Same Coin
- (2007) Lukas Käll et al. JOURNAL OF PROTEOME RESEARCH
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