Mapping connectomes with diffusion MRI: deterministic or probabilistic tractography?

Modelfree global tractography

(2018) Lidia Konopleva et al.   NEUROIMAGE

Surface-enhanced tractography (SET)

(2018) Etienne St-Onge et al.   NEUROIMAGE

Generative models for network neuroscience: prospects and promise

(2017) Richard F. Betzel et al.   Journal of the Royal Society Interface

Machine learning based compartment models with permeability for white matter microstructure imaging

(2017) Gemma L. Nedjati-Gilani et al.   NEUROIMAGE

Disentangling micro from mesostructure by diffusion MRI: A Bayesian approach

(2017) Marco Reisert et al.   NEUROIMAGE

Proportional thresholding in resting-state fMRI functional connectivity networks and consequences for patient-control connectome studies: Issues and recommendations

(2017) Martijn P. van den Heuvel et al.   NEUROIMAGE

Consistency-based thresholding of the human connectome

(2017) James A. Roberts et al.   NEUROIMAGE

The challenge of mapping the human connectome based on diffusion tractography

(2017) Klaus H. Maier-Hein et al.   Nature Communications

Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey

(2016) Chad J. Donahue et al.   JOURNAL OF NEUROSCIENCE

Generative models of the human connectome

(2016) Richard F. Betzel et al.   NEUROIMAGE

Connectome sensitivity or specificity: which is more important?

(2016) Andrew Zalesky et al.   NEUROIMAGE

A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data

(2015) Evan Calabrese et al.   CEREBRAL CORTEX

Validation of High-Resolution Tractography AgainstIn VivoTracing in the Macaque Visual Cortex

(2015) Hojjatollah Azadbakht et al.   CEREBRAL CORTEX

Validation of tractography: Comparison with manganese tracing

(2015) Thomas R. Knösche et al.   HUMAN BRAIN MAPPING

COMMIT: Convex Optimization Modeling for Microstructure Informed Tractography

(2015) Alessandro Daducci et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Strengths and weaknesses of state of the art fiber tractography pipelines – A comprehensive in-vivo and phantom evaluation study using Tractometer

(2015) Peter F. Neher et al.   MEDICAL IMAGE ANALYSIS

Measuring macroscopic brain connections in vivo

(2015) Saad Jbabdi et al.   NATURE NEUROSCIENCE

The effects of SIFT on the reproducibility and biological accuracy of the structural connectome

(2015) Robert E. Smith et al.   NEUROIMAGE

Superficial white matter fiber systems impede detection of long-range cortical connections in diffusion MR tractography

(2015) Colin Reveley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data

(2014) Ben Jeurissen et al.   NEUROIMAGE

Towards quantitative connectivity analysis: reducing tractography biases

(2014) Gabriel Girard et al.   NEUROIMAGE

Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited

(2014) Cibu Thomas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Tractography with Embedded Anatomical Priors for Quantitative Connectivity Analysis

(2014) Alia Lemkaddem et al.   Frontiers in Neurology

Quantitative Comparison of Reconstruction Methods for Intra-Voxel Fiber Recovery From Diffusion MRI

(2013) Alessandro Daducci et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A ranking of diffusion MRI compartment models with in vivo human brain data

(2013) Uran Ferizi et al.   MAGNETIC RESONANCE IN MEDICINE

Fiberfox: Facilitating the creation of realistic white matter software phantoms

(2013) Peter F. Neher et al.   MAGNETIC RESONANCE IN MEDICINE

Tractometer: Towards validation of tractography pipelines

(2013) Marc-Alexandre Côté et al.   MEDICAL IMAGE ANALYSIS

Toward global tractography

(2013) J.-F. Mangin et al.   NEUROIMAGE

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

Graph analysis of the human connectome: Promise, progress, and pitfalls

(2013) Alex Fornito et al.   NEUROIMAGE

Determination of the appropriatebvalue and number of gradient directions for high-angular-resolution diffusion-weighted imaging

(2013) J.-Donald Tournier et al.   NMR IN BIOMEDICINE

Deterministic Diffusion Fiber Tracking Improved by Quantitative Anisotropy

(2013) Fang-Cheng Yeh et al.   PLoS One

Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging

(2012) Ben Jeurissen et al.   HUMAN BRAIN MAPPING

MRtrix: Diffusion tractography in crossing fiber regions

(2012) J-Donald Tournier et al.   INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY

Anatomically-constrained tractography: Improved diffusion MRI streamlines tractography through effective use of anatomical information

(2012) Robert E. Smith et al.   NEUROIMAGE

Brain Graphs: Graphical Models of the Human Brain Connectome

(2011) Edward T. Bullmore et al.   Annual Review of Clinical Psychology

Human connectomics

(2011) Timothy EJ Behrens et al.   CURRENT OPINION IN NEUROBIOLOGY

A Hough transform global probabilistic approach to multiple-subject diffusion MRI tractography

(2011) Iman Aganj et al.   MEDICAL IMAGE ANALYSIS

Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom

(2011) Pierre Fillard et al.   NEUROIMAGE

Compartment models of the diffusion MR signal in brain white matter: A taxonomy and comparison

(2011) Eleftheria Panagiotaki et al.   NEUROIMAGE

An Introduction to Diffusion Tensor Image Analysis

(2011) Lauren J. O’Donnell et al.   NEUROSURGERY CLINICS OF NORTH AMERICA

Novel spherical phantoms for Q-ball imaging under in vivo conditions

(2010) Amir Moussavi-Biugui et al.   MAGNETIC RESONANCE IN MEDICINE

Network-based statistic: Identifying differences in brain networks

(2010) Andrew Zalesky et al.   NEUROIMAGE

Global fiber reconstruction becomes practical

(2010) Marco Reisert et al.   NEUROIMAGE

A DTI-Derived Measure of Cortico-Cortical Connectivity

(2009) A. Zalesky et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Mathematical description of q-space in spherical coordinates: Exact q-ball imaging

(2009) Erick Jorge Canales-Rodríguez et al.   MAGNETIC RESONANCE IN MEDICINE

A software tool to generate simulated white matter structures for the assessment of fibre-tracking algorithms

(2009) Thomas G. Close et al.   NEUROIMAGE

Studying connections in the living human brain with diffusion MRI

(2008) D JONES   CORTEX

Tractography Gone Wild: Probabilistic Fibre Tracking Using the Wild Bootstrap With Diffusion Tensor MRI

(2008) D.K. Jones   IEEE TRANSACTIONS ON MEDICAL IMAGING

DT-MRI Fiber Tracking: A Shortest Paths Approach

(2008) A. Zalesky   IEEE TRANSACTIONS ON MEDICAL IMAGING

Deterministic and Probabilistic Tractography Based on Complex Fibre Orientation Distributions

(2008) M. Descoteaux et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

New diffusion phantoms dedicated to the study and validation of high-angular-resolution diffusion imaging (HARDI) models

(2008) Cyril Poupon et al.   MAGNETIC RESONANCE IN MEDICINE

A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features

(2008) Daniel C. Alexander   MAGNETIC RESONANCE IN MEDICINE

Resolving crossing fibres using constrained spherical deconvolution: Validation using diffusion-weighted imaging phantom data

(2008) J.-Donald Tournier et al.   NEUROIMAGE

Evaluation of the accuracy and angular resolution of q-ball imaging

(2008) Kuan-Hung Cho et al.   NEUROIMAGE

Studying the human brain anatomical network via diffusion-weighted MRI and Graph Theory

(2007) Yasser Iturria-Medina et al.   NEUROIMAGE