Chorioamnionitis exposure remodels the unique histone modification landscape of neonatal monocytes and alters the expression of immune pathway genes

Exposure to chorioamnionitis alters the monocyte transcriptional response to the neonatal pathogen Staphylococcus epidermidis

(2018) Emma de Jong et al.   IMMUNOLOGY AND CELL BIOLOGY

Neonatal Leukemoid Reaction with Fetal Inflammatory Response Syndrome Is Associated with Elevated Serum Granulocyte Colony Stimulating Factor and Interleukin-6

(2018) Toshihiko Nakamura et al.   TOHOKU JOURNAL OF EXPERIMENTAL MEDICINE

In Utero Exposure to Histological Chorioamnionitis Primes the Exometabolomic Profiles of Preterm CD4+T Lymphocytes

(2017) Poojitha Matta et al.   JOURNAL OF IMMUNOLOGY

Regulation of H3K4me3 at Transcriptional Enhancers Characterizes Acquisition of Virus-Specific CD8 + T Cell-Lineage-Specific Function

(2017) Brendan E. Russ et al.   Cell Reports

Super-Enhancers and Broad H3K4me3 Domains Form Complex Gene Regulatory Circuits Involving Chromatin Interactions

(2017) Fan Cao et al.   Scientific Reports

Cytokines in noninvasively obtained amniotic fluid as predictors of fetal inflammatory response syndrome

(2016) Mirjam Kunze et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Histological chorioamnionitis shapes the neonatal transcriptomic immune response

(2016) Jörn-Hendrik Weitkamp et al.   EARLY HUMAN DEVELOPMENT

Hemoglobins as new players in multiple sclerosis: metabolic and immune aspects

(2016) Meric A. Altinoz et al.   METABOLIC BRAIN DISEASE

Augmented Th17-type immune responses in preterm neonates exposed to histologic chorioamnionitis

(2016) Daniel C. Rito et al.   PEDIATRIC RESEARCH

Activation of the IL-1β/CXCL1/MMP-10 axis in chorioamnionitis induced by inactivated Group B Streptococcus

(2016) Julie Bergeron et al.   PLACENTA

Neonatal monocytes exhibit a unique histone modification landscape

(2016) Jennifer R. Bermick et al.   Clinical Epigenetics

Association of Chorioamnionitis with Aberrant Neonatal Gut Colonization and Adverse Clinical Outcomes

(2016) Kriti Puri et al.   PLoS One

Limited specificity of IRF3 and ISGF3 in the transcriptional innate-immune response to double-stranded RNA

(2015) Diana R. Ourthiague et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes

(2015) Kaifu Chen et al.   NATURE GENETICS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data

(2015) Jianguo Xia et al.   Nature Protocols

Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses

(2015) Ruijie Liu et al.   NUCLEIC ACIDS RESEARCH

Age-Related Gene Expression Differences in Monocytes from Human Neonates, Young Adults, and Older Adults

(2015) Michelle M. Lissner et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RNA-seq: impact of RNA degradation on transcript quantification

(2014) Irene Gallego Romero et al.   BMC BIOLOGY

H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency

(2014) Bérénice A. Benayoun et al.   CELL

Transcriptome-wide RNA sequencing analysis of rat skeletal muscle feed arteries. I. Impact of obesity

(2014) Nathan T. Jenkins et al.   JOURNAL OF APPLIED PHYSIOLOGY

Outcomes of Very-Low-Birth-Weight Infants Exposed to Maternal Clinical Chorioamnionitis: A Multicentre Study

(2014) Fermín García-Muñoz Rodrigo et al.   Neonatology

ThePopulusARBORKNOX1 homeodomain transcription factor regulates woody growth through binding to evolutionarily conserved target genes of diverse function

(2014) Lijun Liu et al.   NEW PHYTOLOGIST

Morbidity and Mortality Among Very-low-birth-weight Infants Born to Mothers with Clinical Chorioamnionitis

(2014) Fermín García-Muñoz Rodrigo et al.   Pediatrics and Neonatology

Development and Maturation of the Immune System in Preterm Neonates: Results from a Whole Genome Expression Study

(2014) Magdalena Zasada et al.   Biomed Research International

Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data

(2014) Thomas S. Carroll et al.   Frontiers in Genetics

Inflammation-initiating illnesses, inflammation-related proteins, and cognitive impairment in extremely preterm infants

(2013) T. Michael O’Shea et al.   BRAIN BEHAVIOR AND IMMUNITY

Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section

(2013) Hedvig E Jakobsson et al.   GUT

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

(2013) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Respiratory distress syndrome (RDS) in premature infants is underscored by the magnitude of Th1 cytokine polarization

(2012) Anastasia A. Varvarigou et al.   CYTOKINE

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

(2012) Caryn S. Ross-Innes et al.   NATURE

BioGPS and MyGene.info: organizing online, gene-centric information

(2012) Chunlei Wu et al.   NUCLEIC ACIDS RESEARCH

Responsiveness of human monocytes to the commensal bacterium Staphylococcus epidermidis develops late in gestation

(2012) Tobias Strunk et al.   PEDIATRIC RESEARCH

The Association Between H3K4me3 and Antisense Transcription

(2012) Peng Cui et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Gene expression profiling reveals the defining features of the classical, intermediate, and nonclassical human monocyte subsets

(2011) K. L. Wong et al.   BLOOD

Persistence after birth of systemic inflammation associated with umbilical cord inflammation

(2011) Alan Leviton et al.   JOURNAL OF REPRODUCTIVE IMMUNOLOGY

The Burden of Invasive Early-onset Neonatal Sepsis in the United States, 2005–2008

(2011) Emily J. Weston et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Histologic Chorioamnionitis Is Associated With Reduced Risk of Late-Onset Sepsis in Preterm Infants

(2011) T. Strunk et al.   PEDIATRICS

Global Mapping of H3K4me1 and H3K4me3 Reveals the Chromatin State-Based Cell Type-Specific Gene Regulation in Human Treg Cells

(2011) Yi Tian et al.   PLoS One

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(2010) Lihua J Zhu et al.   BMC BIOINFORMATICS

Effect of maternal clinical chorioamnionitis on neonatal morbidity in very-low birthweight infants: a case-control study

(2010) Francesc Botet et al.   JOURNAL OF PERINATAL MEDICINE

Histone modification levels are predictive for gene expression

(2010) R. Karlic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A multicenter study on the clinical outcome of chorioamnionitis in preterm infants

(2009) Amuchou S. Soraisham et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

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(2009) M. D. Robinson et al.   BIOINFORMATICS

Colonization of second-trimester placenta parenchyma

(2008) Andrew B. Onderdonk et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Prematurity, chorioamnionitis, and the development of recurrent wheezing: A prospective birth cohort study

(2008) Rajesh Kumar et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Epidemiology and causes of preterm birth

(2008) Robert L Goldenberg et al.   LANCET