MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data

bLARS: An Algorithm to Infer Gene Regulatory Networks

(2016) Nitin Singh et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Inference of Gene Regulatory Network Based on Local Bayesian Networks

(2016) Fei Liu et al.   PLoS Computational Biology

Integrative random forest for gene regulatory network inference

(2015) Francesca Petralia et al.   BIOINFORMATICS

Incorporating prior knowledge into Gene Network Study

(2013) Zixing Wang et al.   BIOINFORMATICS

Reconstructing regulatory networks from the dynamic plasticity of gene expression by mutual information

(2013) Jianxin Wang et al.   NUCLEIC ACIDS RESEARCH

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference

(2012) Xiujun Zhang et al.   BIOINFORMATICS

Simultaneous learning of instantaneous and time-delayed genetic interactions using novel information theoretic scoring technique

(2012) Nizamul Morshed et al.   BMC Systems Biology

TIGRESS: Trustful Inference of Gene REgulation using Stability Selection

(2012) Anne-Claire Haury et al.   BMC Systems Biology

parmigene—a parallel R package for mutual information estimation and gene network reconstruction

(2011) Gabriele Sales et al.   BIOINFORMATICS

Identification of context-specific gene regulatory networks with GEMULA—gene expression modeling using LAsso

(2011) Geert Geeven et al.   BIOINFORMATICS

GlobalMIT: learning globally optimal dynamic bayesian network with the mutual information test criterion

(2011) N. X. Vinh et al.   BIOINFORMATICS

Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information

(2011) Xiujun Zhang et al.   BIOINFORMATICS

Learning the structure of gene regulatory networks from time series gene expression data

(2011) Haoni Li et al.   BMC GENOMICS

State Space Model with hidden variables for reconstruction of gene regulatory networks

(2011) Xi Wu et al.   BMC Systems Biology

Construction of regulatory networks using expression time-series data of a genotyped population

(2011) K. Y. Yeung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

A novel gene network inference algorithm using predictive minimum description length approach

(2010) Vijender Chaitankar et al.   BMC Systems Biology

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models

(2008) Osamu Hirose et al.   BIOINFORMATICS

Gene Regulatory Network modelling: a state-space approach

(2008) Fang Xiang Wu   International Journal of Data Mining and Bioinformatics