Simultaneous learning of instantaneous and time-delayed genetic interactions using novel information theoretic scoring technique

GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods

(2011) Thomas Schaffter et al.   BIOINFORMATICS

A model of cyclic transcriptomic behavior in the cyanobacterium Cyanothece sp. ATCC 51142

(2011) Jason E. McDermott et al.   Molecular BioSystems

Directed Partial Correlation: Inferring Large-Scale Gene Regulatory Network through Induced Topology Disruptions

(2011) Yinyin Yuan et al.   PLoS One

A novel gene network inference algorithm using predictive minimum description length approach

(2010) Vijender Chaitankar et al.   BMC Systems Biology

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

(2010) Robert J. Prill et al.   PLoS One

A Yeast Synthetic Network for In Vivo Assessment of Reverse-Engineering and Modeling Approaches

(2009) Irene Cantone et al.   CELL

Generating Realistic In Silico Gene Networks for Performance Assessment of Reverse Engineering Methods

(2009) Daniel Marbach et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

BNFinder: exact and efficient method for learning Bayesian networks

(2008) B. Wilczynski et al.   BIOINFORMATICS

Differential Transcriptional Analysis of the Cyanobacterium Cyanothece sp. Strain ATCC 51142 during Light-Dark and Continuous-Light Growth

(2008) J. Toepel et al.   JOURNAL OF BACTERIOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes

(2008) J. Stockel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA