Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates
Authors
Keywords
T5SS, T6SS, NRPS/PKS, Zeamine, oocydin A, Plant-bacteria interactions, Plasmid, <em class="EmphasisTypeItalic ">Dickeya fangzhongdai</em>
Journal
BMC GENOMICS
Volume 20, Issue 1, Pages -
Publisher
Springer Nature
Online
2019-01-11
DOI
10.1186/s12864-018-5332-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Diversity within the novel Dickeya fangzhongdai sp., isolated from infected orchids, water and pears
- (2018) Š. Alič et al. PLANT PATHOLOGY
- IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
- (2017) Claire Bertelli et al. NUCLEIC ACIDS RESEARCH
- antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification
- (2017) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Putative new species of the genus Dickeya as major soft rot pathogens in Phalaenopsis orchid production
- (2017) Š. Alič et al. PLANT PATHOLOGY
- Aryl Polyenes, a Highly Abundant Class of Bacterial Natural Products, Are Functionally Related to Antioxidative Carotenoids
- (2016) Tim A. Schöner et al. CHEMBIOCHEM
- Dickeya fangzhongdai sp. nov., a plant-pathogenic bacterium isolated from pear trees (Pyrus pyrifolia)
- (2016) Yanli Tian et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.
- (2016) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- PHASTER: a better, faster version of the PHAST phage search tool
- (2016) David Arndt et al. NUCLEIC ACIDS RESEARCH
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani
- (2015) Slimane Khayi et al. BMC GENOMICS
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire
- (2014) Jacques Pédron et al. BMC GENOMICS
- Dickeya aquatica sp. nov., isolated from waterways
- (2014) N. Parkinson et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Phylogenetic study of Japanese Dickeya spp. and development of new rapid identification methods using PCR–RFLP
- (2014) Radix Suharjo et al. JOURNAL OF GENERAL PLANT PATHOLOGY
- Regulators Involved inDickeya solaniVirulence, Genetic Conservation, and Functional Variability
- (2014) Marta Potrykus et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- A Reference Pan-Genome Approach to Comparative Bacterial Genomics: Identification of Novel Epidemiological Markers in Pathogenic Campylobacter
- (2014) Guillaume Méric et al. PLoS One
- Bacterial pectate lyases, structural and functional diversity
- (2014) Nicole Hugouvieux-Cotte-Pattat et al. Environmental Microbiology Reports
- Genome sequence-based species delimitation with confidence intervals and improved distance functions
- (2013) Jan P Meier-Kolthoff et al. BMC BIOINFORMATICS
- Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum)
- (2013) J. M. van der Wolf et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Rhs proteins from diverse bacteria mediate intercellular competition
- (2013) S. Koskiniemi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Role of Secretion Systems and Small Molecules in Soft-RotEnterobacteriaceaePathogenicity
- (2012) Amy Charkowski et al. Annual Review of Phytopathology
- Bacteriocins active against plant pathogenic bacteria: Figure 1
- (2012) Rhys Grinter et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Vfm a new quorum sensing system controls the virulence ofDickeya dadantii
- (2012) William Nasser et al. ENVIRONMENTAL MICROBIOLOGY
- Bacterial Biosynthetic Gene Clusters Encoding the Anti-cancer Haterumalide Class of Molecules
- (2012) Miguel A. Matilla et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Detection of phytopathogens of the genusDickeyausing a PCR primer prediction pipeline for draft bacterial genome sequences
- (2012) L. Pritchard et al. PLANT PATHOLOGY
- Ultra-fast sequence clustering from similarity networks with SiLiX
- (2011) Vincent Miele et al. BMC BIOINFORMATICS
- A Novel Multidomain Polyketide Synthase Is Essential for Zeamine Production and the Virulence ofDickeya zeae
- (2011) Jianuan Zhou et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- Cyanobactins—ribosomal cyclic peptides produced by cyanobacteria
- (2010) Kaarina Sivonen et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Microreview: Type IV secretion systems: versatility and diversity in function
- (2010) Karin Wallden et al. CELLULAR MICROBIOLOGY
- Comparison of 61 Sequenced Escherichia coli Genomes
- (2010) Oksana Lukjancenko et al. MICROBIAL ECOLOGY
- A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria
- (2010) Stephanie K. Aoki et al. NATURE
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5
- (2009) Dmitri V Mavrodi et al. BMC MICROBIOLOGY
- Dickeya species relatedness and clade structure determined by comparison of recA sequences
- (2009) N. Parkinson et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Biological Diversity of Prokaryotic Type IV Secretion Systems
- (2009) C. E. Alvarez-Martinez et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Bacteriocins from plant pathogenic bacteria
- (2008) Ingrid Holtsmark et al. FEMS MICROBIOLOGY LETTERS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now