Genome-wide systematic characterization of bZIP transcription factors and their expression profiles during seed development and in response to salt stress in peanut

Basic leucine zipper transcription factor SlbZIP1 mediates salt and drought stress tolerance in tomato

(2018) Mingku Zhu et al.   BMC PLANT BIOLOGY

Control of seed dormancy and germination by DOG1-AHG1 PP2C phosphatase complex via binding to heme

(2018) Noriyuki Nishimura et al.   Nature Communications

Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum )

(2017) Tyson C. C. Kerr et al.   PLANT CELL AND ENVIRONMENT

Mutant Transcriptome Sequencing Provides Insights into Pod Development in Peanut (Arachis hypogaea L.)

(2017) Liyun Wan et al.   Frontiers in Plant Science

SlbZIP38, a Tomato bZIP Family Gene Downregulated by Abscisic Acid, Is a Negative Regulator of Drought and Salt Stress Tolerance

(2017) Yanglu Pan et al.   Genes

Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus

(2017) Yan Zhou et al.   Genes

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut

(2016) David John Bertioli et al.   NATURE GENETICS

ABI5 Is a Regulator of Seed Maturation and Longevity in Legumes

(2016) Julia Zinsmeister et al.   PLANT CELL

The ArabidopsisDELAY OF GERMINATION 1gene affectsABSCISIC ACID INSENSITIVE 5 (ABI5)expression and genetically interacts withABI3during Arabidopsis seed development

(2016) Bas J.W. Dekkers et al.   PLANT JOURNAL

The Role and Regulation of ABI5 (ABA-Insensitive 5) in Plant Development, Abiotic Stress Responses and Phytohormone Crosstalk

(2016) Anna Skubacz et al.   Frontiers in Plant Science

Genome-wide characterization and analysis of bZIP transcription factor gene family related to abiotic stress in cassava

(2016) Wei Hu et al.   Scientific Reports

Genome-wide analyses of the bZIP family reveal their involvement in the development, ripening and abiotic stress response in banana

(2016) Wei Hu et al.   Scientific Reports

GhABF2, a bZIP transcription factor, confers drought and salinity tolerance in cotton (Gossypium hirsutum L.)

(2016) Chengzhen Liang et al.   Scientific Reports

Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes

(2015) Zhihui Wang et al.   BMC GENOMICS

Genome-wide systematic characterization of the bZIP transcriptional factor family in tomato (Solanum lycopersicum L.)

(2015) Dayong Li et al.   BMC GENOMICS

Genome-wide evolutionary characterization and analysis of bZIP transcription factors and their expression profiles in response to multiple abiotic stresses in Brachypodium distachyon

(2015) Xiang Liu et al.   BMC GENOMICS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Crosstalk between Two bZIP Signaling Pathways Orchestrates Salt-Induced Metabolic Reprogramming in Arabidopsis Roots

(2015) Laura Hartmann et al.   PLANT CELL

S-nitrosylation triggers ABI5 degradation to promote seed germination and seedling growth

(2015) Pablo Albertos et al.   Nature Communications

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera)

(2014) Jinyi Liu et al.   BMC GENOMICS

Basic Leucine Zipper Family in Barley: Genome-Wide Characterization of Members and Expression Analysis

(2014) Ehsan Pourabed et al.   MOLECULAR BIOTECHNOLOGY

Abscisic Acid Regulates Early Seed Development inArabidopsisby ABI5-Mediated Transcription ofSHORT HYPOCOTYL UNDER BLUE1

(2014) Zhi Juan Cheng et al.   PLANT CELL

FourArabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress

(2014) TAKUYA YOSHIDA et al.   PLANT CELL AND ENVIRONMENT

Genome-Wide Analysis of the bZIP Transcription Factors in Cucumber

(2014) Mehmet Cengiz Baloglu et al.   PLoS One

Overexpression of Arachis hypogaea AREB1 Gene Enhances Drought Tolerance by Modulating ROS Scavenging and Maintaining Endogenous ABA Content

(2013) Xiao-Yun Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genomic surveys and expression analysis of bZIP gene family in castor bean (Ricinus communis L.)

(2013) Zhengwei Jin et al.   PLANTA

Genome-Wide Analysis of bZIP-Encoding Genes in Maize

(2012) K. Wei et al.   DNA RESEARCH

Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants

(2012) Yasunari Fujita et al.   PHYSIOLOGIA PLANTARUM

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

The Arabidopsis AtbZIP1 transcription factor is a positive regulator of plant tolerance to salt, osmotic and drought stresses

(2011) Xiaoli Sun et al.   JOURNAL OF PLANT RESEARCH

SnRK2 Protein Kinases—Key Regulators of Plant Response to Abiotic Stresses

(2011) Anna Kulik et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Casein kinase II α subunits affect multiple developmental and stress-responsive pathways in Arabidopsis

(2011) Jidnyasa Jayant Mulekar et al.   PLANT JOURNAL

Sugar signals and molecular networks controlling plant growth

(2010) Sjef Smeekens et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide Expansion and Expression Divergence of the Basic Leucine Zipper Transcription Factors in Higher Plants with an Emphasis on SorghumF

(2010) Jizhou Wang et al.   Journal of Integrative Plant Biology

The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice

(2010) Md. Amir Hossain et al.   JOURNAL OF PLANT PHYSIOLOGY

The transcription factor SlAREB1 confers drought, salt stress tolerance and regulates biotic and abiotic stress-related genes in tomato

(2010) SANDRA ORELLANA et al.   PLANT CELL AND ENVIRONMENT

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Sugar perception and signaling—an update

(2009) Johannes Hanson et al.   CURRENT OPINION IN PLANT BIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation

(2009) Takuya Yoshida et al.   PLANT JOURNAL

A role for protein kinase CK2 in plant development: evidence obtained using a dominant-negative mutant

(2008) Jordi Moreno-Romero et al.   PLANT JOURNAL

Expression patterns within the Arabidopsis C/S1 bZIP transcription factor network: availability of heterodimerization partners controls gene expression during stress response and development

(2008) Fridtjof Weltmeier et al.   PLANT MOLECULAR BIOLOGY