Coordinate regulation of long non-coding RNAs and protein-coding genes in germ-free mice

Women and Their Microbes: The Unexpected Friendship

(2018) Jessica A. Younes et al.   TRENDS IN MICROBIOLOGY

A gut–brain axis regulating glucose metabolism mediated by bile acids and competitive fibroblast growth factor actions at the hypothalamus

(2018) Shunmei Liu et al.   Molecular Metabolism

Regulation of protein-coding gene and long noncoding RNA pairs in liver of conventional and germ-free mice following oral PBDE exposure

(2018) Cindy Yanfei Li et al.   PLoS One

Crosstalk between the microbiome and epigenome: messages from bugs

(2017) Yufeng Qin et al.   JOURNAL OF BIOCHEMISTRY

Profiles of Long Noncoding RNAs in Human Naive and Memory T Cells

(2017) Charles F. Spurlock et al.   JOURNAL OF IMMUNOLOGY

Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells: Lipopolysaccharide Effects In Vitro

(2017) Imran H. Chowdhury et al.   MEDIATORS OF INFLAMMATION

In Vivo Characterization of an AHR-Dependent Long Noncoding RNA Required for Proper Sox9b Expression

(2017) Gloria R. Garcia et al.   MOLECULAR PHARMACOLOGY

NONCODEV5: a comprehensive annotation database for long non-coding RNAs

(2017) ShuangSang Fang et al.   NUCLEIC ACIDS RESEARCH

Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity

(2017) Federico Gaiti et al.   eLife

Integrative Transcriptome Analyses of Metabolic Responses in Mice Define Pivotal LncRNA Metabolic Regulators

(2016) Ling Yang et al.   Cell Metabolism

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The maternal microbiota drives early postnatal innate immune development

(2016) M. Gomez de Aguero et al.   SCIENCE

Long Non-Coding RNAs: A Novel Paradigm for Toxicology

(2016) Joseph L. Dempsey et al.   TOXICOLOGICAL SCIENCES

A Long Non-coding RNA, lncLGR, Regulates Hepatic Glucokinase Expression and Glycogen Storage during Fasting

(2016) Xiangbo Ruan et al.   Cell Reports

lncRNA-RNA Interactions across the Human Transcriptome

(2016) Michał Wojciech Szcześniak et al.   PLoS One

Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout

(2016) Rafet Al-Tobasei et al.   PLoS One

Bcl2 is a critical regulator of bile acid homeostasis by dictating Shp and lncRNA H19 function

(2016) Yuxia Zhang et al.   Scientific Reports

Supplemental epilactose prevents metabolic disorders through uncoupling protein-1 induction in the skeletal muscle of mice fed high-fat diets

(2015) Yuki Murakami et al.   BRITISH JOURNAL OF NUTRITION

A Liver-Enriched Long Non-Coding RNA, lncLSTR, Regulates Systemic Lipid Metabolism in Mice

(2015) Ping Li et al.   Cell Metabolism

Suppression of the HPA Axis During Cholestasis Can Be Attributed to Hypothalamic Bile Acid Signaling

(2015) Matthew McMillin et al.   MOLECULAR ENDOCRINOLOGY

The landscape of long noncoding RNAs in the human transcriptome

(2015) Matthew K Iyer et al.   NATURE GENETICS

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Clinical pharmacology of tenofovir clearance: a pharmacokinetic/pharmacogenetic study on plasma and urines

(2015) A Calcagno et al.   PHARMACOGENOMICS JOURNAL

Developmental Regulation of Drug-Processing Genes in Livers of Germ-Free Mice

(2015) Felcy Pavithra Selwyn et al.   TOXICOLOGICAL SCIENCES

Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome

(2015) Magali Naville et al.   Nature Communications

A catalogue of novel bovine long noncoding RNA across 18 tissues

(2015) Lambros T. Koufariotis et al.   PLoS One

LncTar: a tool for predicting the RNA targets of long noncoding RNAs

(2014) Jianwei Li et al.   BRIEFINGS IN BIOINFORMATICS

Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences

(2014) Laura M. Cox et al.   CELL

Developmental Programming of Long Non-Coding RNAs during Postnatal Liver Maturation in Mice

(2014) Lai Peng et al.   PLoS One

Promoter Analysis Reveals Globally Differential Regulation of Human Long Non-Coding RNA and Protein-Coding Genes

(2014) Tanvir Alam et al.   PLoS One

Genetic and Epigenetic Regulation of Human lincRNA Gene Expression

(2013) Konstantin Popadin et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Microbial genes, brain & behaviour - epigenetic regulation of the gut-brain axis

(2013) R. M. Stilling et al.   GENES BRAIN AND BEHAVIOR

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts

(2013) Sarah Geisler et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Human β Cell Transcriptome Analysis Uncovers lncRNAs That Are Tissue-Specific, Dynamically Regulated, and Abnormally Expressed in Type 2 Diabetes

(2012) Ignasi Morán et al.   Cell Metabolism

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints

(2012) M. Irimia et al.   GENOME RESEARCH

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Coding-Independent Regulation of the Tumor Suppressor PTEN by Competing Endogenous mRNAs

(2011) Yvonne Tay et al.   CELL

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Epigenetic Control of the Host Gene by Commensal Bacteria in Large Intestinal Epithelial Cells

(2011) Kyoko Takahashi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gut Microbiota Modulate the Metabolism of Brown Adipose Tissue in Mice

(2011) Renaud Mestdagh et al.   JOURNAL OF PROTEOME RESEARCH

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

(2011) Kevin C. Wang et al.   NATURE

Nocturnin: a circadian target of Pparg-induced adipogenesis

(2010) Masanobu Kawai et al.   Annals of the New York Academy of Sciences

Long Noncoding RNAs with Enhancer-like Function in Human Cells

(2010) Ulf Andersson Ørom et al.   CELL

A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response

(2010) Maite Huarte et al.   CELL

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

(2010) Laura Poliseno et al.   NATURE

Critical association of ncRNA with introns

(2010) David Rearick et al.   NUCLEIC ACIDS RESEARCH

A circadian-regulated gene, Nocturnin, promotes adipogenesis by stimulating PPAR-  nuclear translocation

(2010) M. Kawai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Intestinal Microbiota Regulate Xenobiotic Metabolism in the Liver

(2009) Britta Björkholm et al.   PLoS One

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

(2009) Ahmad M. Khalil et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intestinal flora induces the expression of Cyp3a in the mouse liver

(2009) T. Toda et al.   XENOBIOTICA

Genomic and Transcriptional Co-Localization of Protein-Coding and Long Non-Coding RNA Pairs in the Developing Brain

(2009) Jasmina Ponjavic et al.   PLoS Genetics

A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition

(2008) M. Beltran et al.   GENES & DEVELOPMENT

Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci

(2008) Rodrigo Louro et al.   GENOMICS

Long intronic noncoding RNA transcription: Expression noise or expression choice?

(2008) Rodrigo Louro et al.   GENOMICS

The Air Noncoding RNA Epigenetically Silences Transcription by Targeting G9a to Chromatin

(2008) T. Nagano et al.   SCIENCE