Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum

Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites

(2018) Sabine A. Fraschka et al.   Cell Host & Microbe

Transcriptional Regulation of Telomeric Expression Sites and Antigenic Variation in Trypanosomes

(2018) Igor Cestari et al.   CURRENT GENOMICS

GDV1 induces sexual commitment of malaria parasites by antagonizing HP1-dependent gene silencing

(2018) Michael Filarsky et al.   SCIENCE

Routine In Vitro Culture of Plasmodium falciparum : Experimental Consequences?

(2018) Sandra Duffy et al.   TRENDS IN PARASITOLOGY

Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites

(2018) Adam J Reid et al.   eLife

Single-Cell Analysis Reveals Distinct Gene Expression and Heterogeneity in Male and Female Plasmodium falciparum Gametocytes

(2018) Katelyn A. Walzer et al.   mSphere

Nascent RNA sequencing reveals mechanisms of gene regulation in the human malaria parasite Plasmodium falciparum

(2017) Xueqing Maggie Lu et al.   NUCLEIC ACIDS RESEARCH

Culture adaptation of malaria parasites selects for convergent loss-of-function mutants

(2017) Antoine Claessens et al.   Scientific Reports

Immunoscreening of Plasmodium falciparum proteins expressed in a wheat germ cell-free system reveals a novel malaria vaccine candidate

(2017) Masayuki Morita et al.   Scientific Reports

Profiling invasive Plasmodium falciparum merozoites using an integrated omics approach

(2017) Krishan Kumar et al.   Scientific Reports

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

(2016) Nicholas J. Schurch et al.   RNA

Variation in Plasmodium falciparum Erythrocyte Invasion Phenotypes and Merozoite Ligand Gene Expression across Different Populations in Areas of Malaria Endemicity

(2015) Paul W. Bowyer et al.   INFECTION AND IMMUNITY

Population Structure Shapes Copy Number Variation in Malaria Parasites

(2015) Ian H. Cheeseman et al.   MOLECULAR BIOLOGY AND EVOLUTION

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Post-translational protein modifications in malaria parasites

(2015) Christian Doerig et al.   NATURE REVIEWS MICROBIOLOGY

Transcriptional profiling defines dynamics of parasite tissue sequestration during malaria infection

(2015) Karell G Pelle et al.   Genome Medicine

Heterochromatin Protein 1 Secures Survival and Transmission of Malaria Parasites

(2014) Nicolas M.B. Brancucci et al.   Cell Host & Microbe

Directional Selection at the pfmdr1, pfcrt, pfubp1, and pfap2mu Loci of Plasmodium falciparum in Kenyan Children Treated With ACT

(2014) Gisela Henriques et al.   JOURNAL OF INFECTIOUS DISEASES

A transcriptional switch underlies commitment to sexual development in malaria parasites

(2014) Björn F. C. Kafsack et al.   NATURE

Population transcriptomics of human malaria parasites reveals the mechanism of artemisinin resistance

(2014) S. Mok et al.   SCIENCE

New antigens for a multicomponent blood-stage malaria vaccine

(2014) F. H. Osier et al.   Science Translational Medicine

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression

(2013) Michele A. Busby et al.   BIOINFORMATICS

Analysis of Antibodies to Newly Described Plasmodium falciparum Merozoite Antigens Supports MSPDBL2 as a Predicted Target of Naturally Acquired Immunity

(2013) Kevin K. A. Tetteh et al.   INFECTION AND IMMUNITY

Identification and Prioritization of Merozoite Antigens as Targets of Protective Human Immunity to Plasmodium falciparum Malaria for Vaccine and Biomarker Development

(2013) J. S. Richards et al.   JOURNAL OF IMMUNOLOGY

Inferring Developmental Stage Composition from Gene Expression in Human Malaria

(2013) Regina Joice et al.   PLoS Computational Biology

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and Pathogenesis

(2012) Matthew L. Jones et al.   Cell Host & Microbe

Transcriptional variation in the malaria parasite Plasmodium falciparum

(2012) N. Rovira-Graells et al.   GENOME RESEARCH

Population Genomic Scan for Candidate Signatures of Balancing Selection to Guide Antigen Characterization in Malaria Parasites

(2012) Alfred Amambua-Ngwa et al.   PLoS Genetics

Sequencing technology does not eliminate biological variability

(2011) Kasper D Hansen et al.   NATURE BIOTECHNOLOGY

clag9 Is Not Essential for PfEMP1 Surface Expression in Non-Cytoadherent Plasmodium falciparum Parasites with a Chromosome 9 Deletion

(2011) Adéla Nacer et al.   PLoS One

Erythrocyte Invasion and Merozoite Ligand Gene Expression in Severe and MildPlasmodium falciparumMalaria

(2010) Natalia Gomez‐Escobar et al.   JOURNAL OF INFECTIOUS DISEASES

Genetic changes during laboratory propagation: Copy number At the reticulocyte-binding protein 1 locus of Plasmodium falciparum

(2010) Shalini Nair et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Allele Frequency-Based and Polymorphism-Versus-Divergence Indices of Balancing Selection in a New Filtered Set of Polymorphic Genes in Plasmodium falciparum

(2010) L. I. Ochola et al.   MOLECULAR BIOLOGY AND EVOLUTION

New insights into the blood-stage transcriptome ofPlasmodium falciparumusing RNA-Seq

(2010) Thomas D. Otto et al.   MOLECULAR MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Gene copy number variation throughout the Plasmodium falciparum genome

(2009) Ian H Cheeseman et al.   BMC GENOMICS

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

(2009) Iwanka Kozarewa et al.   NATURE METHODS

Statistical estimation of cell-cycle progression and lineage commitment in Plasmodium falciparum reveals a homogeneous pattern of transcription in ex vivo culture

(2009) J. E. Lemieux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Transcriptional and Genomic Analysis of Plasmodium falciparum Field Isolates

(2009) Margaret J. Mackinnon et al.   PLoS Pathogens