Factors driving effective population size and pan-genome evolution in bacteria
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Title
Factors driving effective population size and pan-genome evolution in bacteria
Authors
Keywords
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Journal
BMC EVOLUTIONARY BIOLOGY
Volume 18, Issue 1, Pages -
Publisher
Springer Nature America, Inc
Online
2018-10-12
DOI
10.1186/s12862-018-1272-4
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Note: Only part of the references are listed.- Biological Species Are Universal across Life’s Domains
- (2017) Louis-Marie Bobay et al. Genome Biology and Evolution
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- (2017) James O. McInerney et al. Nature Microbiology
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- (2017) James O. McInerney et al. Nature Microbiology
- Genetic and life-history traits associated with the distribution of prophages in bacteria
- (2016) Marie Touchon et al. ISME Journal
- Genetic drift, selection and the evolution of the mutation rate
- (2016) Michael Lynch et al. NATURE REVIEWS GENETICS
- Theory of prokaryotic genome evolution
- (2016) Itamar Sela et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regulation of genetic flux between bacteria by restriction–modification systems
- (2016) Pedro H. Oliveira et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The two-domain tree of life is linked to a new root for the Archaea
- (2015) Kasie Raymann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Weakly Deleterious Mutations and Low Rates of Recombination Limit the Impact of Natural Selection on Bacterial Genomes
- (2015) Morgan N. Price et al. mBio
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
- (2015) Xavier Didelot et al. PLoS Computational Biology
- Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin
- (2014) James R Doroghazi et al. BMC GENOMICS
- Implications of streamlining theory for microbial ecology
- (2014) Stephen J Giovannoni et al. ISME Journal
- Comparative population genomics in animals uncovers the determinants of genetic diversity
- (2014) J. Romiguier et al. NATURE
- Reductive genome evolution at both ends of the bacterial population size spectrum
- (2014) Bérénice Batut et al. NATURE REVIEWS MICROBIOLOGY
- Pervasive domestication of defective prophages by bacteria
- (2014) L.-M. Bobay et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2014) N. Kashtan et al. SCIENCE
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- (2013) Vítor Borges et al. INFECTION GENETICS AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolutionary Implications of Horizontal Gene Transfer
- (2012) Michael Syvanen Annual Review of Genetics
- Drift-barrier hypothesis and mutation-rate evolution
- (2012) W. Sung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Repatterning of Eukaryotic Genomes by Random Genetic Drift
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- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- pegas: an R package for population genetics with an integrated-modular approach
- (2010) E. Paradis BIOINFORMATICS
- Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
- (2010) M. Csuos BIOINFORMATICS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics
- (2010) Sara Vieira-Silva et al. PLoS Genetics
- Mutational Patterns Cannot Explain Genome Composition: Are There Any Neutral Sites in the Genomes of Bacteria?
- (2010) Eduardo P. C. Rocha et al. PLoS Genetics
- Gene Transfer and Diversification of Microbial Eukaryotes
- (2009) Jan O. Andersson Annual Review of Microbiology
- Functional and ecological impacts of horizontal gene transfer in eukaryotes
- (2009) Patrick J Keeling CURRENT OPINION IN GENETICS & DEVELOPMENT
- Intertwined Evolutionary Histories of Marine Synechococcus and Prochlorococcus marinus
- (2009) Olga Zhaxybayeva et al. Genome Biology and Evolution
- The consequences of genetic drift for bacterial genome complexity
- (2009) C.-H. Kuo et al. GENOME RESEARCH
- The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity
- (2009) C. Fraser et al. SCIENCE
- Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
- (2009) Marie Touchon et al. PLoS Genetics
- A comparison of homologous recombination rates in bacteria and archaea
- (2008) Michiel Vos et al. ISME Journal
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
- Evolution of protein-coding genes in Drosophila
- (2008) Amanda M. Larracuente et al. TRENDS IN GENETICS
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