Proteomic and metabolomic analysis of the cellular biomarkers related to inhibitors tolerance in Zymomonas mobilis ZM4

Absence of the KhpA and KhpB (JAG/EloR) RNA-binding proteins suppresses the requirement for PBP2b by overproduction of FtsA in Streptococcus pneumoniae D39

(2017) Jiaqi J. Zheng et al.   MOLECULAR MICROBIOLOGY

Structural insights into lipoprotein N-acylation byEscherichia coliapolipoprotein N-acyltransferase

(2017) Cameron L. Noland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acinetobacter sp. DW-1 immobilized on polyhedron hollow polypropylene balls and analysis of transcriptome and proteome of the bacterium during phenol biodegradation process

(2017) Qihui Gu et al.   Scientific Reports

Interplay of the modified nucleotide phosphoadenosine 5′-phosphosulfate (PAPS) with global regulatory proteins in Escherichia coli : modulation of cyclic AMP (cAMP)-dependent gene expression and interaction with the HupA regulatory protein

(2016) Francesca Longo et al.   CHEMICO-BIOLOGICAL INTERACTIONS

Zymomonas mobilis as a model system for production of biofuels and biochemicals

(2016) Shihui Yang et al.   Microbial Biotechnology

Identification, purification and characterization of furfural transforming enzymes from Clostridium beijerinckii NCIMB 8052

(2015) Yan Zhang et al.   ANAEROBE

Adaptive laboratory evolution of ethanologenic Zymomonas mobilis strain tolerant to furfural and acetic acid inhibitors

(2015) Zong-Xia Shui et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptional analysis of adaptation to high glucose concentrations in Zymomonas mobilis

(2015) Kun Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Mathematical modeling of the fermentation of acid-hydrolyzed pyrolytic sugars to ethanol by the engineered strain Escherichia coli ACCC 11177

(2015) Dongdong Chang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment

(2015) Xia Yi et al.   Biotechnology for Biofuels

Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

(2015) Orawan Borirak et al.   Biotechnology for Biofuels

Improving a recombinant Zymomonas mobilis strain 8b through continuous adaptation on dilute acid pretreated corn stover hydrolysate

(2015) Ali Mohagheghi et al.   Biotechnology for Biofuels

Transcriptomic analysis of Corynebacterium glutamicum in the response to the toxicity of furfural present in lignocellulosic hydrolysates

(2015) Hong-Sil Park et al.   PROCESS BIOCHEMISTRY

Insights into acetate toxicity in Zymomonas mobilis8b using different substrates

(2014) Shihui Yang et al.   Biotechnology for Biofuels

A comparative multidimensional LC-MS proteomic analysis reveals mechanisms for furan aldehyde detoxification in Thermoanaerobacter pseudethanolicus 39E

(2014) Sonya M Clarkson et al.   Biotechnology for Biofuels

Production of Clean Pyrolytic Sugars for Fermentation

(2014) Marjorie R. Rover et al.   ChemSusChem

Tolerance ofS. cerevisiaeandZ. mobilisto inhibitors produced during dilute acid hydrolysis of soybean meal

(2014) Deivis E. Lujan-Rhenals et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART B-PESTICIDES FOOD CONTAMINANTS AND AGRICULTURAL WASTES

Trehalose facilitates DNA melting: a single-molecule optical tweezers study

(2014) Sergey Bezrukavnikov et al.   Soft Matter

Interrelations between translation and general mRNA degradation in yeast

(2014) Susanne Huch et al.   Wiley Interdisciplinary Reviews-RNA

Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 to elucidate role of furfural stress during acetone butanol ethanol fermentation

(2013) Yan Zhang et al.   Biotechnology for Biofuels

Inhibition of growth of Zymomonas mobilis by model compounds found in lignocellulosic hydrolysates

(2013) Mary Ann Franden et al.   Biotechnology for Biofuels

L-glutamine provides acid resistance for Escherichia coli through enzymatic release of ammonia

(2013) Peilong Lu et al.   CELL RESEARCH

Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses

(2013) Shihui Yang et al.   PLoS One

Engineering furfural tolerance in Escherichia coli improves the fermentation of lignocellulosic sugars into renewable chemicals

(2013) X. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Respiratory Chain Analysis of Zymomonas mobilis Mutants Producing High Levels of Ethanol

(2012) Takeshi Hayashi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptome profiling of Zymomonas mobilis under furfural stress

(2012) Ming-xiong He et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genome-wide transcriptomic analysis of a flocculent strain of Zymomonas mobilis

(2012) Young Jae Jeon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptome profiling of Zymomonas mobilis under ethanol stress

(2012) Ming-xiong He et al.   Biotechnology for Biofuels

Protease signalling: the cutting edge

(2012) Boris Turk et al.   EMBO JOURNAL

HcpR of Porphyromonas gingivalis Is Required for Growth under Nitrosative Stress and Survival within Host Cells

(2012) Janina P. Lewis et al.   INFECTION AND IMMUNITY

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Proteomic Research Reveals the Stress Response and Detoxification of Yeast to Combined Inhibitors

(2012) Ming-Zhu Ding et al.   PLoS One

Engineering ethanologenic Escherichia coli for levoglucosan utilization

(2011) Donovan S. Layton et al.   BIORESOURCE TECHNOLOGY

Overexpression of the yeast transcription activator Msn2 confers furfural resistance and increases the initial fermentation rate in ethanol production

(2011) Yu Sasano et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Heterosubunit Composition and Crystal Structures of a Novel Bacterial M16B Metallopeptidase

(2011) Yukie Maruyama et al.   JOURNAL OF MOLECULAR BIOLOGY

The dgt gene of Escherichia coli facilitates thymine utilization in thymine-requiring strains

(2011) Mark Itsko et al.   MOLECULAR MICROBIOLOGY

TonB-Dependent Transporters: Regulation, Structure, and Function

(2010) Nicholas Noinaj et al.   Annual Review of Microbiology

Separation, hydrolysis and fermentation of pyrolytic sugars to produce ethanol and lipids

(2010) Jieni Lian et al.   BIORESOURCE TECHNOLOGY

The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors

(2010) Shihui Yang et al.   BMC MICROBIOLOGY

Technology development for the production of biobased products from biorefinery carbohydrates—the US Department of Energy’s “Top 10” revisited

(2010) Joseph J. Bozell et al.   GREEN CHEMISTRY

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

(2010) S. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A method for enzyme quenching in microbial metabolome analysis successfully applied to gram-positive and gram-negative bacteria and yeast

(2009) Jana Spura et al.   ANALYTICAL BIOCHEMISTRY

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

(2009) Tobias Kind et al.   ANALYTICAL CHEMISTRY

Furfural Inhibits Growth by Limiting Sulfur Assimilation in Ethanologenic Escherichia coli Strain LY180

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations

(2009) Shihui Yang et al.   BMC GENOMICS

A novel aminopeptidase fromBurkholderia cepaciaspecific for acidic amino acids

(2009) Sahayog Narayan Jamdar   FEMS MICROBIOLOGY LETTERS

Arginine and lysine decarboxylases and the Acid Tolerance Response of Salmonella Typhimurium

(2009) Avelino Álvarez-Ordóñez et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Hopanoids Play a Role in Membrane Integrity and pH Homeostasis in Rhodopseudomonas palustris TIE-1

(2009) P. V. Welander et al.   JOURNAL OF BACTERIOLOGY

Development of a high-throughput method to evaluate the impact of inhibitory compounds from lignocellulosic hydrolysates on the growth of Zymomonas mobilis

(2009) Mary Ann Franden et al.   JOURNAL OF BIOTECHNOLOGY

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Temporal quantitative proteomics of Saccharomyces cerevisiae in response to a nonlethal concentration of furfural

(2009) Feng-Ming Lin et al.   PROTEOMICS

The Role of Glutathione in Photosynthetic Organisms: Emerging Functions for Glutaredoxins and Glutathionylation

(2008) Nicolas Rouhier et al.   Annual Review of Plant Biology

Formic acid induces Yca1p-independent apoptosis-like cell death in the yeast Saccharomyces cerevisiae

(2008) Lin Du et al.   FEMS YEAST RESEARCH

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

A Novel Mutator of Escherichia coli Carrying a Defect in the dgt Gene, Encoding a dGTP Triphosphohydrolase

(2008) D. Gawel et al.   JOURNAL OF BACTERIOLOGY

New substrates for TonB-dependent transport: do we only see the ‘tip of the iceberg’?

(2008) Kristine Schauer et al.   TRENDS IN BIOCHEMICAL SCIENCES