International Space Station conditions alter genomics, proteomics, and metabolomics in Aspergillus nidulans

Insight into the global regulation of laeA in Aspergillus flavus based on proteomic profiling

(2018) Yangyong Lv et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149

(2018) Rok Tkavc et al.   Frontiers in Microbiology

Cellular Responses of the Lichen Circinaria gyrosa in Mars-Like Conditions

(2018) Rosa de la Torre Noetzel et al.   Frontiers in Microbiology

Survival, DNA, and Ultrastructural Integrity of a Cryptoendolithic Antarctic Fungus in Mars and Lunar Rock Analogues Exposed Outside the International Space Station

(2018) Silvano Onofri et al.   ASTROBIOLOGY

Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue

(2017) Deanna L. Plubell et al.   MOLECULAR & CELLULAR PROTEOMICS

Small heat shock proteins, phylogeny in filamentous fungi and expression analyses in Aspergillus nidulans

(2016) Jianbing Wu et al.   GENE

Discovery of McrA, a master regulator ofAspergillussecondary metabolism

(2016) C. Elizabeth Oakley et al.   MOLECULAR MICROBIOLOGY

Resilient microorganisms in dust samples of the International Space Station—survival of the adaptation specialists

(2016) Maximilian Mora et al.   Microbiome

Characterization of Aspergillus fumigatus Isolates from Air and Surfaces of the International Space Station

(2016) Benjamin P. Knox et al.   mSphere

Indoor fungal diversity and asthma: A meta-analysis and systematic review of risk factors

(2015) Richard A. Sharpe et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Use of genome sequencing to assess nucleotide structure variation of Staphylococcus aureus strains cultured in spaceflight on Shenzhou-X, under simulated microgravity and on the ground

(2015) Jun Guo et al.   MICROBIOLOGICAL RESEARCH

How to trigger a fungal weapon

(2015) Hubertus Haas   eLife

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities

(2015) Aleksandra Checinska et al.   Microbiome

Space radiation effects on plant and mammalian cells

(2014) C. Arena et al.   ACTA ASTRONAUTICA

International Space Station environmental microbiome — microbial inventories of ISS filter debris

(2014) Kasthuri Venkateswaran et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

Recent advances in genome mining of secondary metabolite biosynthetic gene clusters and the development of heterologous expression systems in Aspergillus nidulans

(2013) Junko Yaegashi et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Natural Products As Sources of New Drugs over the 30 Years from 1981 to 2010

(2012) David J. Newman et al.   JOURNAL OF NATURAL PRODUCTS

Two Separate Gene Clusters Encode the Biosynthetic Pathway for the Meroterpenoids Austinol and Dehydroaustinol in Aspergillus nidulans

(2012) Hsien-Chun Lo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Advances in Aspergillus secondary metabolite research in the post-genomic era

(2012) James F. Sanchez et al.   NATURAL PRODUCT REPORTS

Regulation of fungal secondary metabolism

(2012) Axel A. Brakhage   NATURE REVIEWS MICROBIOLOGY

Accurate prediction of secondary metabolite gene clusters in filamentous fungi

(2012) M. R. Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Degradation of mRNAs that lack a stop codon: a decade of nonstop progress

(2012) A. Alejandra Klauer et al.   Wiley Interdisciplinary Reviews-RNA

Effects of laeA deletion on Aspergillus flavus conidial development and hydrophobicity may contribute to loss of aflatoxin production

(2011) Perng-Kuang Chang et al.   Fungal Biology

Genome-Based Deletion Analysis Reveals the Prenyl Xanthone Biosynthesis Pathway inAspergillus nidulans

(2011) James F. Sanchez et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

FungiDB: an integrated functional genomics database for fungi

(2011) J. E. Stajich et al.   NUCLEIC ACIDS RESEARCH

Microbial contamination monitoring and control during human space missions

(2011) Rob Van Houdt et al.   PLANETARY AND SPACE SCIENCE

Characterization of the Aspergillus nidulans Monodictyphenone Gene Cluster

(2010) Y.-M. Chiang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of transcriptional and translational changes caused by long-term menadione exposure in Aspergillus nidulans

(2010) Tünde Pusztahelyi et al.   FUNGAL GENETICS AND BIOLOGY

The Fungal Genetics Stock Center: a repository for 50 years of fungal genetics research

(2010) K. McCluskey et al.   JOURNAL OF BIOSCIENCES

Space Microbiology

(2010) G. Horneck et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Effects of sparsely and densely ionizing radiation on plants

(2010) Veronica De Micco et al.   RADIATION AND ENVIRONMENTAL BIOPHYSICS

Resistance of Antarctic black fungi and cryptoendolithic communities to simulated space and Martian conditions

(2010) S. Onofri et al.   STUDIES IN MYCOLOGY

LaeA Control of Velvet Family Regulatory Proteins for Light-Dependent Development and Fungal Cell-Type Specificity

(2010) Özlem Sarikaya Bayram et al.   PLoS Genetics

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Directed evolution of a filamentous fungus for thermotolerance

(2009) Eudes de Crecy et al.   BMC BIOTECHNOLOGY

Aspergillosis

(2009) Brahm H. Segal   NEW ENGLAND JOURNAL OF MEDICINE

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

(2009) Martha B. Arnaud et al.   NUCLEIC ACIDS RESEARCH

Halotolerant and halophilic fungi

(2009) Nina Gunde-Cimerman et al.  

Identification and Characterization of the Asperthecin Gene Cluster of Aspergillus nidulans

(2008) E. Szewczyk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The global regulator LaeA controls penicillin biosynthesis, pigmentation and sporulation, but not roquefortine C synthesis in Penicillium chrysogenum

(2008) Katarina Kosalková et al.   BIOCHIMIE

Molecular Genetic Mining of the Aspergillus Secondary Metabolome: Discovery of the Emericellamide Biosynthetic Pathway

(2008) Yi-Ming Chiang et al.   CHEMISTRY & BIOLOGY

Ionizing radiation: how fungi cope, adapt, and exploit with the help of melanin

(2008) Ekaterina Dadachova et al.   CURRENT OPINION IN MICROBIOLOGY

Adaptive Melanin Response of the Soil Fungus Aspergillus niger to UV Radiation Stress at “Evolution Canyon”, Mount Carmel, Israel

(2008) Natarajan Singaravelan et al.   PLoS One

Media Ion Composition Controls Regulatory and Virulence Response of Salmonella in Spaceflight

(2008) James W. Wilson et al.   PLoS One