Discovery of McrA, a master regulator ofAspergillussecondary metabolism

Development of Genetic Dereplication Strains in Aspergillus nidulans Results in the Discovery of Aspercryptin

(2015) Yi-Ming Chiang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Genome mining and molecular characterization of the biosynthetic gene cluster of a diterpenic meroterpenoid, 15-deoxyoxalicine B, in Penicillium canescens

(2015) Junko Yaegashi et al.   Chemical Science

Cyclodepsipeptides and Other O-Containing Heterocyclic Metabolites from Beauveria felina EN-135, a Marine-Derived Entomopathogenic Fungus

(2014) Feng-Yu Du et al.   Marine Drugs

Molecular Genetic Characterization of Terreic Acid Pathway in Aspergillus terreus

(2014) Chun-Jun Guo et al.   ORGANIC LETTERS

Characterization of the Mutagenic Spectrum of 4-Nitroquinoline 1-Oxide (4-NQO) in Aspergillus nidulans by Whole Genome Sequencing

(2014) Damien J. Downes et al.   G3-Genes Genomes Genetics

The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κB

(2014) Yasar Luqman Ahmed et al.   PLOS BIOLOGY

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae

(2013) Diane O Inglis et al.   BMC MICROBIOLOGY

Recent advances in genome mining of secondary metabolite biosynthetic gene clusters and the development of heterologous expression systems in Aspergillus nidulans

(2013) Junko Yaegashi et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

An Efficient System for Heterologous Expression of Secondary Metabolite Genes in Aspergillus nidulans

(2013) Yi-Ming Chiang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

TheAspergillusGenome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

(2013) Gustavo C. Cerqueira et al.   NUCLEIC ACIDS RESEARCH

Molecular Genetic Characterization of the Biosynthesis Cluster of a Prenylated Isoindolinone Alkaloid Aspernidine A in Aspergillus nidulans

(2013) Junko Yaegashi et al.   ORGANIC LETTERS

Identification of Metabolic Pathways Influenced by the G-Protein Coupled Receptors GprB and GprD in Aspergillus nidulans

(2013) Wagner R. de Souza et al.   PLoS One

The Putative C2H2 Transcription Factor MtfA Is a Novel Regulator of Secondary Metabolism and Morphogenesis in Aspergillus nidulans

(2013) Vellaisamy Ramamoorthy et al.   PLoS One

Breaking the Silence: Protein Stabilization Uncovers Silenced Biosynthetic Gene Clusters in the Fungus Aspergillus nidulans

(2012) Jennifer Gerke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aoyap1 regulates OTA synthesis by controlling cell redox balance in Aspergillus ochraceus

(2012) Massimo Reverberi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcriptional Changes in the Transition from Vegetative Cells to Asexual Development in the Model Fungus Aspergillus nidulans

(2012) Aitor Garzia et al.   EUKARYOTIC CELL

Illuminating the Diversity of Aromatic Polyketide Synthases in Aspergillus nidulans

(2012) Manmeet Ahuja et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Advances in Aspergillus secondary metabolite research in the post-genomic era

(2012) James F. Sanchez et al.   NATURAL PRODUCT REPORTS

Regulation of fungal secondary metabolism

(2012) Axel A. Brakhage   NATURE REVIEWS MICROBIOLOGY

Reengineering an Azaphilone Biosynthesis Pathway in Aspergillus nidulans To Create Lipoxygenase Inhibitors

(2012) Amber D. Somoza et al.   ORGANIC LETTERS

Identification and Characterization of a Novel Diterpene Gene Cluster in Aspergillus nidulans

(2012) Kirsi Bromann et al.   PLoS One

Accurate prediction of secondary metabolite gene clusters in filamentous fungi

(2012) M. R. Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and molecular genetic analysis of the cichorine gene cluster in Aspergillus nidulans

(2012) James F. Sanchez et al.   MedChemComm

The Aspergillus nidulans MAPK Module AnSte11-Ste50-Ste7-Fus3 Controls Development and Secondary Metabolism

(2012) Özgür Bayram et al.   PLoS Genetics

Transcriptional regulatory elements in fungal secondary metabolism

(2011) Wenbing Yin et al.   JOURNAL OF MICROBIOLOGY

Genome-Based Deletion Analysis Reveals the Prenyl Xanthone Biosynthesis Pathway inAspergillus nidulans

(2011) James F. Sanchez et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Characterization of the Aspergillus nidulans Monodictyphenone Gene Cluster

(2010) Y.-M. Chiang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SMURF: Genomic mapping of fungal secondary metabolite clusters

(2010) Nora Khaldi et al.   FUNGAL GENETICS AND BIOLOGY

Fungal secondary metabolites – Strategies to activate silent gene clusters

(2010) Axel A. Brakhage et al.   FUNGAL GENETICS AND BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Beyond aflatoxin: four distinct expression patterns and functional roles associated withAspergillus flavussecondary metabolism gene clusters

(2009) D. RYAN GEORGIANNA et al.   MOLECULAR PLANT PATHOLOGY

Chromatin-level regulation of biosynthetic gene clusters

(2009) Jin Woo Bok et al.   Nature Chemical Biology

Hidden biosynthetic treasures brought to light

(2009) Christian Hertweck   Nature Chemical Biology

Molecular Genetic Mining of the Aspergillus Secondary Metabolome: Discovery of the Emericellamide Biosynthetic Pathway

(2008) Yi-Ming Chiang et al.   CHEMISTRY & BIOLOGY

Secondary metabolism: regulation and role in fungal biology

(2008) Ellen M Fox et al.   CURRENT OPINION IN MICROBIOLOGY

The VeA regulatory system and its role in morphological and chemical development in fungi

(2008) Ana M. Calvo   FUNGAL GENETICS AND BIOLOGY

What do we know about the role of gliotoxin in the pathobiology ofAspergillus fumigatus?

(2008) Kyung J. Kwon-Chung et al.   MEDICAL MYCOLOGY

VelB/VeA/LaeA Complex Coordinates Light Signal with Fungal Development and Secondary Metabolism

(2008) O. Bayram et al.   SCIENCE

Biosynthetic gene clusters for epipolythiodioxopiperazines in filamentous fungi

(2007) Ellen M. Fox et al.