Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation

Burnaia Miller, 2001 (Gastropoda, Heterobranchia, Nudibranchia): a facelinid genus with an Aeolidiidae’s outward appearance

(2015) Leila Carmona et al.   HELGOLAND MARINE RESEARCH

Molecular investigation of the phylogenetic position of the polar nudibranch Doridoxa (Mollusca, Gastropoda, Heterobranchia)

(2015) Jermaine Mahguib et al.   POLAR BIOLOGY

Integrative systematics of northern and Arctic nudibranchs of the genusDendronotus(Mollusca, Gastropoda), with descriptions of three new species

(2015) Irina Ekimova et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Duration of sperm storage in the simultaneous hermaphrodite Lymnaea stagnalis

(2014) Y. Nakadera et al.   JOURNAL OF MOLLUSCAN STUDIES

Divergent maximum-likelihood-branch-support values for polytomies

(2014) Mark P. Simmons et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda

(2014) F. Zapata et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0

(2014) Adam L. Bazinet et al.   SYSTEMATIC BIOLOGY

Systematic review ofAnteaeolidiella(Mollusca, Nudibranchia, Aeolidiidae) based on morphological and molecular data, with a description of three new species

(2014) Leila Carmona et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Untangling theSpurilla neapolitana(Delle Chiaje, 1841) species complex: a review of the genusSpurilla Bergh, 1864 (Mollusca: Nudibranchia: Aeolidiidae)

(2014) Leila Carmona et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The end of a long controversy: systematics of the genus Limenandra (Mollusca: Nudibranchia: Aeolidiidae)

(2013) Leila Carmona et al.   HELGOLAND MARINE RESEARCH

Decisive Data Sets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects

(2013) Emiliano Dell’Ampio et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics supports Panpulmonata: Opisthobranch paraphyly and key evolutionary steps in a major radiation of gastropod molluscs

(2013) Kevin M. Kocot et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

Flashback and foreshadowing—a review of the taxon Opisthobranchia

(2013) Heike Wägele et al.   ORGANISMS DIVERSITY & EVOLUTION

A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies)

(2013) Jerome C. Regier et al.   PLoS One

A Tale That Morphology Fails to Tell: A Molecular Phylogeny of Aeolidiidae (Aeolidida, Nudibranchia, Gastropoda)

(2013) Leila Carmona et al.   PLoS One

Can RNA-Seq Resolve the Rapid Radiation of Advanced Moths and Butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An Exploratory Study

(2013) Adam L. Bazinet et al.   PLoS One

Conserved Genes, Sampling Error, and Phylogenomic Inference

(2013) Ricardo Betancur-R. et al.   SYSTEMATIC BIOLOGY

Database resources of the National Center for Biotechnology Information

(2012)   NUCLEIC ACIDS RESEARCH

Long Branch Effects Distort Maximum Likelihood Phylogenies in Simulations Despite Selection of the Correct Model

(2012) Patrick Kück et al.   PLoS One

Resolving Discrepancy between Nucleotides and Amino Acids in Deep-Level Arthropod Phylogenomics: Differentiating Serine Codons in 21-Amino-Acid Models

(2012) Andreas Zwick et al.   PLoS One

Homology and homoplasy of swimming behaviors and neural circuits in the Nudipleura (Mollusca, Gastropoda, Opisthobranchia)

(2012) J. M. Newcomb et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular data illuminate cryptic nudibranch species: the evolution of the Scyllaeidae (Nudibranchia: Dendronotina) with a revision of Notobryon

(2012) MARTA POLA et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Highlights of marine invertebrate-derived biosynthetic products: Their biomedical potential and possible production by microbial associants

(2011) Ocky K. Radjasa et al.   BIOORGANIC & MEDICINAL CHEMISTRY

A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships

(2011) Claire Lemaitre et al.   BMC BIOINFORMATICS

Misleading results of likelihood-based phylogenetic analyses in the presence of missing data

(2011) Mark P. Simmons   CLADISTICS

Dotofide, a Guanidine-Interrupted Terpenoid from the Marine Slug Doto pinnatifida (Gastropoda, Nudibranchia)

(2011) Annika Putz et al.   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

A new species of deep-sea Dendronotus Alder & Hancock (Mollusca�:�Nudibranchia) from California, with an expanded phylogeny of the genus

(2011) Carla C. Stout et al.   INVERTEBRATE SYSTEMATICS

A molecular approach to the phylogenetic status of the aeolid genus Babakina Roller, 1973 (Nudibranchia)

(2011) Leila Carmona et al.   JOURNAL OF MOLLUSCAN STUDIES

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)?

(2011) Soowon Cho et al.   SYSTEMATIC BIOLOGY

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

(2011) John J. Wiens et al.   SYSTEMATIC BIOLOGY

Previously undocumented diversity and abundance of cryptic species: a phylogenetic analysis of Indo-Pacific Arminidae Rafinesque, 1814 (Mollusca: Nudibranchia) with descriptions of 20 new species of Dermatobranchus

(2011) TERRENCE M. GOSLINER et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Phylogenetic analysis of Dendronotus nudibranchs with emphasis on northeastern Pacific species

(2010) C. C. Stout et al.   JOURNAL OF MOLLUSCAN STUDIES

On the phylogeny of the Arminidae (Gastropoda, Opisthobranchia, Nudibranchia) with considerations of biogeography

(2010) A. Kolb et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

The first molecular phylogeny of cladobranchian opisthobranchs (Mollusca, Gastropoda, Nudibranchia)

(2010) Marta Pola et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular phylogeny and evolution of symbiosis in a clade of Indopacific nudibranchs

(2010) Elizabeth J. Moore et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Defensive strategies of Cladobranchia (Gastropoda, Opisthobranchia)

(2010) Annika Putz et al.   NATURAL PRODUCT REPORTS

The odyssey of marine pharmaceuticals: a current pipeline perspective

(2010) Alejandro M.S. Mayer et al.   TRENDS IN PHARMACOLOGICAL SCIENCES

Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

(2009) J Gordon Burleigh et al.   BMC EVOLUTIONARY BIOLOGY

HaMStR: Profile hidden markov model based search for orthologs in ESTs

(2009) Ingo Ebersberger et al.   BMC EVOLUTIONARY BIOLOGY

Acquisition and use of nematocysts by cnidarian predators

(2009) Paul G. Greenwood   TOXICON

Marine chemical ecology

(2008) Valerie J. Paul et al.   NATURAL PRODUCT REPORTS