DNA metabarcoding reveals the complex and hidden responses of chironomids to multiple stressors

Multiple-stressor effects on stream macroinvertebrate communities: A mesocosm experiment manipulating salinity, fine sediment and flow velocity

(2018) Arne J. Beermann et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Estimating intraspecific genetic diversity from community DNA metabarcoding data

(2018) Vasco Elbrecht et al.   PeerJ

Metabarcoding of freshwater invertebrates to detect the effects of a pesticide spill

(2017) Carmelo Andújar et al.   MOLECULAR ECOLOGY

Shotgun mitogenomics across body size classes in a local assemblage of tropical Diptera: Phylogeny, species diversity and mitochondrial abundance spectrum

(2017) Le Qin Choo et al.   MOLECULAR ECOLOGY

DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient

(2017) Caroline E. Emilson et al.   Scientific Reports

Widely distributed and regionally isolated! Drivers of genetic structure in Gammarus fossarum in a human-impacted landscape

(2016) Martina Weiss et al.   BMC EVOLUTIONARY BIOLOGY

Multiple-stressor effects on stream invertebrates: DNA barcoding reveals contrasting responses of cryptic mayfly species

(2016) Jan N. Macher et al.   ECOLOGICAL INDICATORS

PrimerMiner : an r package for development and in silico validation of DNA metabarcoding primers

(2016) Vasco Elbrecht et al.   Methods in Ecology and Evolution

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Blind Flight? A New Troglobiotic Orthoclad (Diptera, Chironomidae) from the Lukina Jama – Trojama Cave in Croatia

(2016) Trond Andersen et al.   PLoS One

Reconceptualizing synergism and antagonism among multiple stressors

(2015) Jeremy J. Piggott et al.   Ecology and Evolution

Exposing the structure of an Arctic food web

(2015) Helena K. Wirta et al.   Ecology and Evolution

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Exploring Genetic Divergence in a Species-Rich Insect Genus Using 2790 DNA Barcodes

(2015) Xiaolong Lin et al.   PLoS One

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing

(2015) Joel F. Gibson et al.   PLoS One

Climate warming and agricultural stressors interact to determine stream periphyton community composition

(2014) Jeremy J. Piggott et al.   GLOBAL CHANGE BIOLOGY

Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods

(2014) J. Piñol et al.   Molecular Ecology Resources

Does DNA barcoding improve performance of traditional stream bioassessment metrics?

(2014) Eric D. Stein et al.   Freshwater Science

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

(2013) Melissa E Carew et al.   Frontiers in Zoology

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Taxonomic sufficiency in freshwater ecosystems: effects of taxonomic resolution, functional traits, and data transformation

(2013) Melanie Mueller et al.   Freshwater Science

How far can we go in simplifying biomonitoring assessments? An integrated analysis of taxonomic surrogacy, taxonomic sufficiency and numerical resolution in a megadiverse region

(2012) Victor Lemes Landeiro et al.   ECOLOGICAL INDICATORS

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Improving environmental and biodiversity monitoring in the Baltic Sea using DNA barcoding of Chironomidae (Diptera)

(2012) Y. Brodin et al.   Molecular Ecology Resources

Efficient biodiversity monitoring: Which taxonomic level to study?

(2011) Athanasios S. Kallimanis et al.   ECOLOGICAL INDICATORS

DNA Barcoding of Marine Metazoa

(2010) Ann Bucklin et al.   Annual Review of Marine Science

Multiple stressors in freshwater ecosystems

(2010) S. J. ORMEROD et al.   FRESHWATER BIOLOGY

Taxonomic sufficiency: The influence of taxonomic resolution on freshwater bioassessments using benthic macroinvertebrates

(2009) F. Chris Jones   ENVIRONMENTAL REVIEWS

Reproductive Isolation and Ecological Niche Partition among Larvae of the Morphologically Cryptic Sister Species Chironomus riparius and C. piger

(2008) Markus Pfenninger et al.   PLoS One