Phylogenomic analyses uncover origin and spread of the Wolbachia pandemic

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Wolbachiaeffects in natural populations ofChorthippus parallelusfrom the Pyrenean hybrid zone

(2014) M. Zabal-Aguirre et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evolutionary origin of insect-Wolbachia nutritional mutualism

(2014) N. Nikoh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers

(2013) Gabriel Renaud et al.   BIOINFORMATICS

Phylogenomics and Analysis of Shared Genes Suggest a Single Transition to Mutualism in Wolbachia of Nematodes

(2013) Francesco Comandatore et al.   Genome Biology and Evolution

Lateral transfers of insertion sequences between Wolbachia, Cardinium and Rickettsia bacterial endosymbionts

(2013) O Duron   HEREDITY

Identifying a species tree subject to random lateral gene transfer

(2013) Mike Steel et al.   JOURNAL OF THEORETICAL BIOLOGY

DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution

(2013) Xuhua Xia   MOLECULAR BIOLOGY AND EVOLUTION

Tracing horizontalWolbachiamovements among bees (Anthophila): a combined approach using multilocus sequence typing data and host phylogeny

(2013) Michael Gerth et al.   MOLECULAR ECOLOGY

BaCoCa – A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions

(2013) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular phylogenetic analysis of a novel strain from Neelipleona enriches Wolbachia diversity in soil biota

(2013) Viola Tanganelli et al.   PEDOBIOLOGIA

PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment

(2013) Nicolas Lartillot et al.   SYSTEMATIC BIOLOGY

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Wolbachiafilarial interactions

(2012) Mark J. Taylor et al.   CELLULAR MICROBIOLOGY

Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera

(2012) Oliver Niehuis et al.   CURRENT BIOLOGY

The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets

(2012) Christelle Godel et al.   FASEB JOURNAL

Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis

(2012) A. C. Darby et al.   GENOME RESEARCH

A new type F Wolbachia from Splendidofilariinae (Onchocercidae) supports the recent emergence of this supergroup

(2012) Emilie Lefoulon et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Still a Host of Hosts for Wolbachia: Analysis of Recent Data Suggests That 40% of Terrestrial Arthropod Species Are Infected

(2012) Roman Zug et al.   PLoS One

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches

(2011) Filip Husník et al.   BMC BIOLOGY

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

New Insights into the Evolution of Wolbachia Infections in Filarial Nematodes Inferred from a Large Range of Screened Species

(2011) Emanuele Ferri et al.   PLoS One

FASconCAT: Convenient handling of data matrices

(2010) Patrick Kück et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer

(2010) Samantha N. McNulty et al.   PLoS One

Phage WO of Wolbachia: lambda of the endosymbiont world

(2010) Bethany N. Kent et al.   TRENDS IN MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Antibiotic treatment leads to the elimination of Wolbachia endosymbionts and sterility in the diplodiploid collembolan Folsomia candida

(2009) Nathan Pike et al.   BMC BIOLOGY

On the phylogenetic position of Myzostomida: Can 77 genes get it wrong?

(2009) Christoph Bleidorn et al.   BMC EVOLUTIONARY BIOLOGY

A Randomized Trial of Doxycycline forMansonella perstansInfection

(2009) Yaya I. Coulibaly et al.   NEW ENGLAND JOURNAL OF MEDICINE

Wolbachia as a bacteriocyte-associated nutritional mutualist

(2009) T. Hosokawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

How Diverse Is the Genus Wolbachia? Multiple-Gene Sequencing Reveals a Putatively New Wolbachia Supergroup Recovered from Spider Mites (Acari: Tetranychidae)

(2008) V. I. D. Ros et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wolbachia endosymbiont is essential for egg hatching in a parthenogenetic arthropod

(2008) Martijn J. T. N. Timmermans et al.   EVOLUTIONARY ECOLOGY

Parasitism and Mutualism in Wolbachia: What the Phylogenomic Trees Can and Cannot Say

(2008) S. R. Bordenstein et al.   MOLECULAR BIOLOGY AND EVOLUTION

Wolbachia: master manipulators of invertebrate biology

(2008) John H. Werren et al.   NATURE REVIEWS MICROBIOLOGY