Integration of in vitro and in silico Models Using Bayesian Optimization With an Application to Stochastic Modeling of Mesenchymal 3D Cell Migration

Three-dimensional simulation of obstacle-mediated chemotaxis

(2018) Adrian Moure et al.   Biomechanics and Modeling in Mechanobiology

A hybrid computational model for collective cell durotaxis

(2018) Jorge Escribano et al.   Biomechanics and Modeling in Mechanobiology

Degradation of extracellular matrix regulates osteoblast migration: A microfluidic-based study

(2018) N. Movilla et al.   BONE

Mechanical modeling of collective cell migration: An agent-based and continuum material approach

(2018) Ismael González-Valverde et al.   COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING

Combined experimental and computational characterization of crosslinked collagen-based hydrogels

(2018) Clara Valero et al.   PLoS One

Computational modeling of three-dimensional ECM-rigidity sensing to guide directed cell migration

(2018) Min-Cheol Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian model selection for complex dynamic systems

(2018) Christoph Mark et al.   Nature Communications

Quantifying 3D chemotaxis in microfluidic-based chips with step gradients of collagen hydrogel concentrations

(2017) C. Del Amo et al.   Integrative Biology

Physical models of collective cell motility: from cell to tissue

(2017) B A Camley et al.   JOURNAL OF PHYSICS D-APPLIED PHYSICS

The role of nuclear mechanics in cell deformation under creeping flows

(2017) Francisco Serrano-Alcalde et al.   JOURNAL OF THEORETICAL BIOLOGY

Amoeboid-mesenchymal migration plasticity promotes invasion only in complex heterogeneous microenvironments

(2017) Katrin Talkenberger et al.   Scientific Reports

Engineered Models of Confined Cell Migration

(2016) Colin D. Paul et al.   Annual Review of Biomedical Engineering

Plasticity of Cell Migration In Vivo and In Silico

(2016) Veronika te Boekhorst et al.   Annual Review of Cell and Developmental Biology

Computational model of mesenchymal migration in 3D under chemotaxis

(2016) F. O. Ribeiro et al.   COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING

Phenomenological modelling and simulation of cell clusters in 3D cultures

(2016) I. González-Valverde et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Single-Cell Migration in Complex Microenvironments: Mechanics and Signaling Dynamics

(2016) Michael Mak et al.   JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME

Taking the Human Out of the Loop: A Review of Bayesian Optimization

(2016) Bobak Shahriari et al.   PROCEEDINGS OF THE IEEE

Collective cell durotaxis emerges from long-range intercellular force transmission

(2016) R. Sunyer et al.   SCIENCE

Comparison of cell migration mechanical strategies in three-dimensional matrices: a computational study

(2016) Jie Zhu et al.   Interface Focus

Effects of endothelial cell proliferation and migration rates in a computational model of sprouting angiogenesis

(2016) Kerri-Ann Norton et al.   Scientific Reports

Modeling the formation of cell-matrix adhesions on a single 3D matrix fiber

(2015) J. Escribano et al.   JOURNAL OF THEORETICAL BIOLOGY

The Vital Role of Blood Flow-Induced Proliferation and Migration in Capillary Network Formation in a Multiscale Model of Angiogenesis

(2015) Hossein Bazmara et al.   PLoS One

Robust optimization of SVM hyperparameters in the classification of bioactive compounds

(2015) Wojciech M Czarnecki et al.   Journal of Cheminformatics

Cell Invasion Dynamics into a Three Dimensional Extracellular Matrix Fibre Network

(2015) Min-Cheol Kim et al.   PLoS Computational Biology

Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results

(2015) P. Van Liedekerke et al.   Computational Particle Mechanics

Inducing chemotactic and haptotactic cues in microfluidic devices for three-dimensional in vitro assays

(2014) O. Moreno-Arotzena et al.   Biomicrofluidics

Directed migration of mesenchymal cells: where signaling and the cytoskeleton meet

(2014) James E Bear et al.   CURRENT OPINION IN CELL BIOLOGY

Nonlinear finite element simulations of injuries with free boundaries: Application to surgical wounds

(2014) C. Valero et al.   International Journal for Numerical Methods in Biomedical Engineering

Mesoscopic and continuum modelling of angiogenesis

(2014) F. Spill et al.   JOURNAL OF MATHEMATICAL BIOLOGY

A Review of Platelet Derived Growth Factor Playing Pivotal Role in Bone Regeneration

(2014) Prasun Shah et al.   Journal of Oral Implantology

Generalized Bhattacharyya and Chernoff upper bounds on Bayes error using quasi-arithmetic means

(2014) Frank Nielsen   PATTERN RECOGNITION LETTERS

Substrate Stiffness Regulates Filopodial Activities in Lung Cancer Cells

(2014) Yu-Ren Liou et al.   PLoS One

A Cell-Regulatory Mechanism Involving Feedback between Contraction and Tissue Formation Guides Wound Healing Progression

(2014) Clara Valero et al.   PLoS One

SEM++: A particle model of cellular growth, signaling and migration

(2014) Florian Milde et al.   Computational Particle Mechanics

The enhancement of bone regeneration by gene activated matrix encoding for platelet derived growth factor

(2013) Satheesh Elangovan et al.   BIOMATERIALS

A Cell-Based Model of Extracellular-Matrix-Guided Endothelial Cell Migration During Angiogenesis

(2013) Josephine T. Daub et al.   BULLETIN OF MATHEMATICAL BIOLOGY

A cellular Potts model for the MMP-dependent and -independent cancer cell migration in matrix microtracks of different dimensions

(2013) Marco Scianna et al.   COMPUTATIONAL MECHANICS

Mechanical guidance of cell migration: lessons from chemotaxis

(2013) Pere Roca-Cusachs et al.   CURRENT OPINION IN CELL BIOLOGY

The Role of Recombinant Human Platelet-derived Growth Factor-BB (rhPDGF-BB) in Orthopaedic Bone Repair and Regeneration

(2013) Gary E. Friedlaender et al.   CURRENT PHARMACEUTICAL DESIGN

Mechanotransduction of mesenchymal melanoma cell invasion into 3D collagen lattices: Filopod-mediated extension–relaxation cycles and force anisotropy

(2013) Josefine Starke et al.   EXPERIMENTAL CELL RESEARCH

Physical limits of cell migration: Control by ECM space and nuclear deformation and tuning by proteolysis and traction force

(2013) Katarina Wolf et al.   JOURNAL OF CELL BIOLOGY

Simulating Multivariate Nonhomogeneous Poisson Processes Using Projections

(2012) Evan A. Saltzman et al.   ACM Transactions on Modeling and Computer Simulation

Computational Modeling of Single-Cell Migration: The Leading Role of Extracellular Matrix Fibers

(2012) Daniela K. Schlüter et al.   BIOPHYSICAL JOURNAL

Molecular investigation of the mechanical properties of single actin filaments based on vibration analyses

(2012) Tong Li et al.   COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING

A lattice-based approach to model distraction osteogenesis

(2012) E. Reina-Romo et al.   JOURNAL OF BIOMECHANICS

Dynamic Mechanisms of Cell Rigidity Sensing: Insights from a Computational Model of Actomyosin Networks

(2012) Carlos Borau et al.   PLoS One

Evidence of a large-scale mechanosensing mechanism for cellular adaptation to substrate stiffness

(2012) L. Trichet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Error analysis of tau-leap simulation methods

(2011) David F. Anderson et al.   ANNALS OF APPLIED PROBABILITY

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

Cell behaviors regulated by guidance cues in collective migration of border cells

(2011) Minna Poukkula et al.   JOURNAL OF CELL BIOLOGY

A finite-element model for healing of cutaneous wounds combining contraction, angiogenesis and closure

(2011) F. J. Vermolen et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Mechano-sensing and cell migration: a 3D model approach

(2011) C Borau et al.   PHYSICAL BIOLOGY

A Comparison of Mathematical Models for Polarization of Single Eukaryotic Cells in Response to Guided Cues

(2011) Alexandra Jilkine et al.   PLoS Computational Biology

Eukaryotic Chemotaxis: A Network of Signaling Pathways Controls Motility, Directional Sensing, and Polarity

(2010) Kristen F. Swaney et al.   Annual Review of Biophysics

Directional Persistence of Cell Migration Coincides with Stability of Asymmetric Intracellular Signaling

(2010) Michael C. Weiger et al.   BIOPHYSICAL JOURNAL

A distinctive role for focal adhesion proteins in three-dimensional cell motility

(2010) Stephanie I. Fraley et al.   NATURE CELL BIOLOGY

A nucleator arms race: cellular control of actin assembly

(2010) Kenneth G. Campellone et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Modeling cell migration in 3D

(2010) Rajagopal Rangarajan et al.   Cell Adhesion & Migration

A Bayesian exploration-exploitation approach for optimal online sensing and planning with a visually guided mobile robot

(2009) Ruben Martinez-Cantin et al.   AUTONOMOUS ROBOTS

Receptor oligomerization and beyond: a case study in bone morphogenetic proteins

(2009) Kai Heinecke et al.   BMC BIOLOGY

Plasticity of cell migration: a multiscale tuning model

(2009) Peter Friedl et al.   JOURNAL OF CELL BIOLOGY

Wound repair at a glance

(2009) T. J. Shaw et al.   JOURNAL OF CELL SCIENCE

Navigation of Chemotactic Cells by Parallel Signaling to Pseudopod Persistence and Orientation

(2009) Leonard Bosgraaf et al.   PLoS One

Tipping the Balance: Robustness of Tip Cell Selection, Migration and Fusion in Angiogenesis

(2009) Katie Bentley et al.   PLoS Computational Biology

Topography of Extracellular Matrix Mediates Vascular Morphogenesis and Migration Speeds in Angiogenesis

(2009) Amy L. Bauer et al.   PLoS Computational Biology

Contact Guidance Mediated Three-Dimensional Cell Migration is Regulated by Rho/ROCK-Dependent Matrix Reorganization

(2008) Paolo P. Provenzano et al.   BIOPHYSICAL JOURNAL

Rapid leukocyte migration by integrin-independent flowing and squeezing

(2008) Tim Lämmermann et al.   NATURE