RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing

The American cranberry: first insights into the whole genome of a species adapted to bog habitat

(2014) James Polashock et al.   BMC PLANT BIOLOGY

Patterns of simple sequence repeats in cultivated blueberries (Vaccinium section Cyanococcus spp.) and their use in revealing genetic diversity and population structure

(2014) Yang Bian et al.   MOLECULAR BREEDING

Natural Products as Promising Drug Candidates for the Treatment of Alzheimer’s Disease: Molecular Mechanism Aspect

(2013) Niloufar Ansari et al.   Current Neuropharmacology

Forward Genetics by Genome Sequencing Reveals That Rapid Cyanide Release Deters Insect Herbivory of Sorghum bicolor

(2013) K. Krothapalli et al.   GENETICS

Efficient Quantification of the Health-Relevant Anthocyanin and Phenolic Acid Profiles in Commercial Cultivars and Breeding Selections of Blueberries (Vaccinium spp.)

(2013) Gad G. Yousef et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Recent advances in understanding the anti-diabetic actions of dietary flavonoids

(2013) Pon Velayutham Anandh Babu et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

RNA-Seq of Arabidopsis Pollen Uncovers Novel Transcription and Alternative Splicing

(2013) A. E. Loraine et al.   PLANT PHYSIOLOGY

Identification of Cytokinin-Responsive Genes Using Microarray Meta-Analysis and RNA-Seq in Arabidopsis

(2013) A. Bhargava et al.   PLANT PHYSIOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a

(2012) Alyssa A. Gulledge et al.   AMERICAN JOURNAL OF BOTANY

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

Dietary (Poly)phenolics in Human Health: Structures, Bioavailability, and Evidence of Protective Effects Against Chronic Diseases

(2012) Daniele Del Rio et al.   ANTIOXIDANTS & REDOX SIGNALING

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation

(2012) Lisa J Rowland et al.   BMC PLANT BIOLOGY

De novo sequencing and comparative analysis of the blueberry transcriptome to discover putative genes related to antioxidants

(2012) Xiaoyan Li et al.   GENE

Relative impact of flavonoid composition, dose and structure on vascular function: A systematic review of randomised controlled trials of flavonoid-rich food products

(2012) Colin D. Kay et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Dietary Polyphenols as Modulators of Brain Functions: Biological Actions and Molecular Mechanisms Underpinning Their Beneficial Effects

(2012) David Vauzour   Oxidative Medicine and Cellular Longevity

Understanding angiosperm diversification using small and large phylogenetic trees

(2011) S. A. Smith et al.   AMERICAN JOURNAL OF BOTANY

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

Quercetin downregulates Mcl-1 by acting on mRNA stability and protein degradation

(2011) C Spagnuolo et al.   BRITISH JOURNAL OF CANCER

Blueberries and Their Anthocyanins: Factors Affecting Biosynthesis and Properties

(2011) Winny Routray et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Gene Expression and Metabolite Profiling of Developing Highbush Blueberry Fruit Indicates Transcriptional Regulation of Flavonoid Metabolism and Activation of Abscisic Acid Metabolism

(2011) M. Zifkin et al.   PLANT PHYSIOLOGY

Annatto Constituent Cis-Bixin Has Selective Antimyeloma Effects Mediated by Oxidative Stress and Associated with Inhibition of Thioredoxin and Thioredoxin Reductase

(2010) Jennifer D. Tibodeau et al.   ANTIOXIDANTS & REDOX SIGNALING

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Prevalence of alternative splicing choices in Arabidopsis thaliana

(2010) Adam C English et al.   BMC PLANT BIOLOGY

Molecular characterization of bixin—An important industrial product

(2010) Ramamoorthy Siva et al.   INDUSTRIAL CROPS AND PRODUCTS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants

(2010) P. Zhang et al.   PLANT PHYSIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Bixin regulates mRNA expression involved in adipogenesis and enhances insulin sensitivity in 3T3-L1 adipocytes through PPARγ activation

(2009) Nobuyuki Takahashi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

(2009)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

(2009) P. D. Karp et al.   BRIEFINGS IN BIOINFORMATICS

Cyanogenic Foods (Cassava, Fruit Kernels, and Cycad Seeds)

(2009) Donald G. Barceloux   DM DISEASE-A-MONTH

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Hypoglycemic activity of a novel anthocyanin-rich formulation from lowbush blueberry, Vaccinium angustifolium Aiton

(2009) Mary H. Grace et al.   PHYTOMEDICINE

Functional Analysis of Transcription Factors in Arabidopsis

(2009) Nobutaka Mitsuda et al.   PLANT AND CELL PHYSIOLOGY

Phenolic profile and antioxidant activity of highbush blueberry (Vaccinium corymbosum L.) during fruit maturation and ripening

(2008) Alejandro David Rodarte Castrejón et al.   FOOD CHEMISTRY

CressExpress: A Tool For Large-Scale Mining of Expression Data from Arabidopsis

(2008) V. Srinivasasainagendra et al.   PLANT PHYSIOLOGY