An Introduction to Automated Flow Cytometry Gating Tools and Their Implementation

Data analysis as a source of variability of the HLA-peptide multimer assay: from manual gating to automated recognition of cell clusters

(2015) Cécile Gouttefangeas et al.   CANCER IMMUNOLOGY IMMUNOTHERAPY

Automated flow cytometric analysis across large numbers of samples and cell types

(2015) Xiaoyi Chen et al.   CLINICAL IMMUNOLOGY

Circulating TNF and mitochondrial DNA are major determinants of neutrophil phenotype in the advanced-age, frail elderly

(2015) Chris P. Verschoor et al.   MOLECULAR IMMUNOLOGY

Cell population identification using fluorescence-minus-one controls with a one-class classifying algorithm

(2014) Kristen Feher et al.   BIOINFORMATICS

flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification

(2014) Mehrnoush Malek et al.   BIOINFORMATICS

ImmPort: disseminating data to the public for the future of immunology

(2014) Sanchita Bhattacharya et al.   IMMUNOLOGIC RESEARCH

Alterations to the Frequency and Function of Peripheral Blood Monocytes and Associations with Chronic Disease in the Advanced-Age, Frail Elderly

(2014) Chris P. Verschoor et al.   PLoS One

Immune Biomarkers Predictive of Respiratory Viral Infection in Elderly Nursing Home Residents

(2014) Jennie Johnstone et al.   PLoS One

Automated identification of stratifying signatures in cellular subpopulations

(2014) Robert V. Bruggner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis

(2014) Greg Finak et al.   PLoS Computational Biology

Immunosenescence in the nursing home elderly

(2014) Jennie Johnstone et al.   BMC Geriatrics

An introduction to mass cytometry: fundamentals and applications

(2013) Scott D. Tanner et al.   CANCER IMMUNOLOGY IMMUNOTHERAPY

Blood CD33(+)HLA-DR(−) myeloid-derived suppressor cells are increased with age and a history of cancer

(2013) Chris P. Verschoor et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Critical assessment of automated flow cytometry data analysis techniques

(2013) Nima Aghaeepour et al.   NATURE METHODS

Standardization of CD62P measurement: results of an international comparative study

(2013) E. Levin et al.   VOX SANGUINIS

Flow Cytometry Bioinformatics

(2013) Kieran O'Neill et al.   PLoS Computational Biology

flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding

(2012) Y. Ge et al.   BIOINFORMATICS

Cytometry: Today’s technology and tomorrow’s horizons

(2012) Pratip K. Chattopadhyay et al.   METHODS

The Polyfunctionality of Human Memory CD8+ T Cells Elicited by Acute and Chronic Virus Infections Is Not Influenced by Age

(2012) Alina Lelic et al.   PLoS Pathogens

Expansion of a CD8+PD-1+ Replicative Senescence Phenotype in Early Stage CLL Patients Is Associated with Inverted CD4:CD8 Ratios and Disease Progression

(2011) C. Nunes et al.   CLINICAL CANCER RESEARCH

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

(2011) Peng Qiu et al.   NATURE BIOTECHNOLOGY

Data reduction for spectral clustering to analyze high throughput flow cytometry data

(2010) Habil Zare et al.   BMC BIOINFORMATICS

On extensions of k-means clustering for automated gating of flow cytometry data

(2010) George Luta   CYTOMETRY PART A

Rapid cell population identification in flow cytometry data

(2010) Nima Aghaeepour et al.   CYTOMETRY PART A

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

(2010) Yu Qian et al.   CYTOMETRY PART B-CLINICAL CYTOMETRY

TCLUST: A Fast Method for Clustering Genome-Scale Expression Data

(2010) Banu Dost et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Automated high-dimensional flow cytometric data analysis

(2009) S. Pyne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The presence of CD56/CD16 in T-cell acute lymphoblastic leukaemia correlates with the expression of cytotoxic molecules and is associated with worse response to treatment

(2008) Leandro F. F. Dalmazzo et al.   BRITISH JOURNAL OF HAEMATOLOGY

Standardization and optimization of multiparameter intracellular cytokine staining

(2008) Laurel Nomura et al.   CYTOMETRY PART A