Flow Cytometry Bioinformatics

Critical assessment of automated flow cytometry data analysis techniques

(2013) Nima Aghaeepour et al.   NATURE METHODS

Contribution of Multiparameter Flow Cytometry Immunophenotyping to the Diagnostic Screening and Classification of Pediatric Cancer

(2013) Cristiane S. Ferreira-Facio et al.   PLoS One

Integration of Lyoplate Based Flow Cytometry and Computational Analysis for Standardized Immunological Biomarker Discovery

(2013) Federica Villanova et al.   PLoS One

B Cells With High Side Scatter Parameter by Flow Cytometry Correlate With Inferior Survival in Diffuse Large B-Cell Lymphoma

(2012) Ali Bashashati et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays*

(2012) Nima Aghaeepour et al.   BIOINFORMATICS

flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding

(2012) Y. Ge et al.   BIOINFORMATICS

FCSTrans: An open source software system for FCS file conversion and data transformation

(2012) Yu Qian et al.   CYTOMETRY PART A

Update for the logicle data scale including operational code implementations

(2012) Wayne A. Moore et al.   CYTOMETRY PART A

RchyOptimyx: Cellular hierarchy optimization for flow cytometry

(2012) Nima Aghaeepour et al.   CYTOMETRY PART A

FlowRepository: A resource of annotated flow cytometry datasets associated with peer-reviewed publications

(2012) Josef Spidlen et al.   CYTOMETRY PART A

Single-cell mass cytometry adapted to measurements of the cell cycle

(2012) Gregory K. Behbehani et al.   CYTOMETRY PART A

From single cells to deep phenotypes in cancer

(2012) Sean C Bendall et al.   NATURE BIOTECHNOLOGY

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

(2012) Bernd Bodenmiller et al.   NATURE BIOTECHNOLOGY

Inferring Phenotypic Properties from Single-Cell Characteristics

(2012) Peng Qiu   PLoS One

Automated Analysis of Multidimensional Flow Cytometry Data Improves Diagnostic Accuracy Between Mantle Cell Lymphoma and Small Lymphocytic Lymphoma

(2011) Habil Zare et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

(2011) Peng Qiu et al.   NATURE BIOTECHNOLOGY

High-throughput microfluidic single-cell RT-qPCR

(2011) A. K. White et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

Flow cytometry in clinical pathology

(2011) P. F. Virgo et al.   ANNALS OF CLINICAL BIOCHEMISTRY

Optimizing transformations for automated, high throughput analysis of flow cytometry data

(2010) Greg Finak et al.   BMC BIOINFORMATICS

Data reduction for spectral clustering to analyze high throughput flow cytometry data

(2010) Habil Zare et al.   BMC BIOINFORMATICS

Data analysis in flow cytometry: The future just started

(2010) Enrico Lugli et al.   CYTOMETRY PART A

Rapid cell population identification in flow cytometry data

(2010) Nima Aghaeepour et al.   CYTOMETRY PART A

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

(2010) Yu Qian et al.   CYTOMETRY PART B-CLINICAL CYTOMETRY

Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping

(2010) E S Costa et al.   LEUKEMIA

Computational solutions to large-scale data management and analysis

(2010) Eric E. Schadt et al.   NATURE REVIEWS GENETICS

Past, present and future applications of flow cytometry in aquatic microbiology

(2010) Yingying Wang et al.   TRENDS IN BIOTECHNOLOGY

flowClust: a Bioconductor package for automated gating of flow cytometry data

(2009) Kenneth Lo et al.   BMC BIOINFORMATICS

flowCore: a Bioconductor package for high throughput flow cytometry

(2009) Florian Hahne et al.   BMC BIOINFORMATICS

Automated high-dimensional flow cytometric data analysis

(2009) S. Pyne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gating-ML: XML-based gating descriptions in flow cytometry

(2008) Josef Spidlen et al.   CYTOMETRY PART A

Automated gating of flow cytometry data via robust model-based clustering

(2008) Kenneth Lo et al.   CYTOMETRY PART A

MIFlowCyt: The minimum information about a flow cytometry experiment

(2008) Jamie A. Lee et al.   CYTOMETRY PART A

Cytometric fingerprinting: Quantitative characterization of multivariate distributions

(2008) Wade T. Rogers et al.   CYTOMETRY PART A

A chromatic explosion: the development and future of multiparameter flow cytometry

(2008) Pratip K. Chattopadhyay et al.   IMMUNOLOGY