Automated identification of stratifying signatures in cellular subpopulations

Prognostic Relevance of Treatment Response Measured by Flow Cytometric Residual Disease Detection in Older Patients With Acute Myeloid Leukemia

(2013) Sylvie D. Freeman et al.   JOURNAL OF CLINICAL ONCOLOGY

Critical assessment of automated flow cytometry data analysis techniques

(2013) Nima Aghaeepour et al.   NATURE METHODS

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays*

(2012) Nima Aghaeepour et al.   BIOINFORMATICS

flowPeaks: a fast unsupervised clustering for flow cytometry data via K-means and density peak finding

(2012) Y. Ge et al.   BIOINFORMATICS

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

(2012) Bernd Bodenmiller et al.   NATURE BIOTECHNOLOGY

Using cross-validation to evaluate predictive accuracy of survival risk classifiers based on high-dimensional data

(2011) R. M. Simon et al.   BRIEFINGS IN BIOINFORMATICS

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum

(2011) S. C. Bendall et al.   SCIENCE

Misty Mountain clustering: application to fast unsupervised flow cytometry gating

(2010) Istvan P Sugar et al.   BMC BIOINFORMATICS

Data reduction for spectral clustering to analyze high throughput flow cytometry data

(2010) Habil Zare et al.   BMC BIOINFORMATICS

Rapid cell population identification in flow cytometry data

(2010) Nima Aghaeepour et al.   CYTOMETRY PART A

Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data

(2010) Yu Qian et al.   CYTOMETRY PART B-CLINICAL CYTOMETRY

B-cell signaling networks reveal a negative prognostic human lymphoma cell subset that emerges during tumor progression

(2010) J. M. Irish et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Risk of Relapse of Childhood Acute Lymphoblastic Leukemia Is Predicted By Flow Cytometric Measurement of Residual Disease on Day 15 Bone Marrow

(2009) Giuseppe Basso et al.   JOURNAL OF CLINICAL ONCOLOGY

Immunologic and Virologic Events in Early HIV Infection Predict Subsequent Rate of Progression

(2009) Anuradha Ganesan et al.   JOURNAL OF INFECTIOUS DISEASES

Automated high-dimensional flow cytometric data analysis

(2009) S. Pyne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-Cell Profiling Identifies Aberrant STAT5 Activation in Myeloid Malignancies with Specific Clinical and Biologic Correlates

(2008) Nikesh Kotecha et al.   CANCER CELL

Phenotype and function of human T lymphocyte subsets: Consensus and issues

(2008) Victor Appay et al.   CYTOMETRY PART A

Automated gating of flow cytometry data via robust model-based clustering

(2008) Kenneth Lo et al.   CYTOMETRY PART A

Increasing Age at HIV Seroconversion From 18 to 40 Years Is Associated With Favorable Virologic and Immunologic Responses to HAART

(2008) Amy C Weintrob et al.   JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES