Cork Oak Young and Traumatic Periderms Show PCD Typical Chromatin Patterns but Different Chromatin-Modifying Genes Expression

A molecular framework to study periderm formation in Arabidopsis

(2018) Anna Wunderling et al.   NEW PHYTOLOGIST

The draft genome sequence of cork oak

(2018) António Marcos Ramos et al.   Scientific Data

Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery

(2017) Xiuli Bi et al.   GENOME RESEARCH

20 years of the SMART protein domain annotation resource

(2017) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

A comparative transcriptomic approach to understanding the formation of cork

(2017) Pau Boher et al.   PLANT MOLECULAR BIOLOGY

ATX3 , ATX4 , and ATX5 Encode Putative H3K4 Methyltransferases and Are Critical for Plant Development

(2017) Li-Qun Chen et al.   PLANT PHYSIOLOGY

Transcriptional profiling of cork oak phellogenic cells isolated by laser microdissection

(2017) Rita Teresa Teixeira et al.   PLANTA

Linking epigenetic function to electrostatics: The DNMT2 structural model example

(2017) Gilberto Cavalheiro Vieira et al.   PLoS One

Differential DNA Methylation Patterns Are Related to Phellogen Origin and Quality of Quercus suber Cork

(2017) Vera Inácio et al.   PLoS One

Integrated analysis and transcript abundance modelling of H3K4me3 and H3K27me3 in developing secondary xylem

(2017) Steven G. Hussey et al.   Scientific Reports

Mechanical stress mediated by both endosperm softening and embryo growth underlies endosperm elimination inArabidopsisseeds

(2016) Chloé Fourquin et al.   DEVELOPMENT

Plant programmed cell death from a chromatin point of view

(2016) D. Latrasse et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Time course of programmed cell death, which included autophagic features, in hybrid tobacco cells expressing hybrid lethality

(2016) Naoya Ueno et al.   PLANT CELL REPORTS

MTHFD1 controls DNA methylation in Arabidopsis

(2016) Martin Groth et al.   Nature Communications

AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex

(2015) Tomasz Bieluszewski et al.   BMC PLANT BIOLOGY

Control of plant cell differentiation by histone modification and DNA methylation

(2015) Momoko Ikeuchi et al.   CURRENT OPINION IN PLANT BIOLOGY

The many faces of plant chromatin: Meeting summary of the 4th European workshop onplantchromatin 2015, Uppsala, Sweden

(2015) Iva Mozgová et al.   Epigenetics

TheSHORT-ROOT-like genePtSHR2Bis involved inPopulusphellogen activity

(2015) Andreia Miguel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Epigenetic and hormonal profile during maturation of Quercus Suber L. somatic embryos

(2015) Marta Pérez et al.   JOURNAL OF PLANT PHYSIOLOGY

Partial depolymerization of genetically modified potato tuber periderm reveals intermolecular linkages in suberin polyester

(2015) José Graça et al.   PHYTOCHEMISTRY

A Genome-Wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence

(2015) Judy A. Brusslan et al.   PLANT PHYSIOLOGY

Only in dying, life: programmed cell death during plant development

(2015) Tom Van Hautegem et al.   TRENDS IN PLANT SCIENCE

Epigenetic Control of Cell Division and Cell Differentiation in the Root Apex

(2015) Hirotomo Takatsuka et al.   Frontiers in Plant Science

Chromatin dynamics in pollen mother cells underpin a common scenario at the somatic-to-reproductive fate transition of both the male and female lineages in Arabidopsis

(2015) Wenjing She et al.   Frontiers in Plant Science

A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing

(2014) José B Pereira-Leal et al.   BMC GENOMICS

Early markers are present in both embryogenesis pathways from microspores and immature zygotic embryos in cork oak, Quercus suberL

(2014) Héctor Rodríguez-Sanz et al.   BMC PLANT BIOLOGY

Programmed Cell Death Controlled by ANAC033/SOMBRERO Determines Root Cap Organ Size in Arabidopsis

(2014) Matyáš Fendrych et al.   CURRENT BIOLOGY

Changes in DNA Methylation Levels and Nuclear Distribution Patterns after Microspore Reprogramming to Embryogenesis in Barley

(2014) Ahmed-Abdalla El-Tantawy et al.   CYTOGENETIC AND GENOME RESEARCH

Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE

(2014) Jiamu Du et al.   MOLECULAR CELL

The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States

(2014) J. Sequeira-Mendes et al.   PLANT CELL

REPRESSOR OF SILENCING5 Encodes a Member of the Small Heat Shock Protein Family and Is Required for DNA Demethylation in Arabidopsis

(2014) Y. Zhao et al.   PLANT CELL

Suberin: biosynthesis, regulation, and polymer assembly of a protective extracellular barrier

(2014) Sollapura J. Vishwanath et al.   PLANT CELL REPORTS

Epigenetic Regulation in Plants

(2014) C. S. Pikaard et al.   Cold Spring Harbor Perspectives in Biology

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Variations on a theme: Polycomb group proteins in plants

(2013) Maria Derkacheva et al.   JOURNAL OF EXPERIMENTAL BOTANY

Epigenetic Changes Accompany Developmental Programmed Cell Death in Tapetum Cells

(2013) M.-T. Solis et al.   PLANT AND CELL PHYSIOLOGY

An efficient immunodetection method for histone modifications in plants

(2013) Geovanny Nic-Can et al.   Plant Methods

Analysis of TET Expression/Activity and 5mC Oxidation during Normal and Malignant Germ Cell Development

(2013) Daniel Nettersheim et al.   PLoS One

Expression of DNA methyltransferases is involved in Quercus suber cork quality

(2013) Miguel Ramos et al.   Tree Genetics & Genomes

Epigenetic characterization of chromatin in cycling cells of pedunculate oak, Quercus robur L.

(2013) V. Vičić et al.   Tree Genetics & Genomes

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

(2012) Jiamu Du et al.   CELL

How resilient is Quercus suber L. to cork harvesting? A review and identification of knowledge gaps

(2012) Graça Oliveira et al.   FOREST ECOLOGY AND MANAGEMENT

Genomic organization and dynamics of repetitive DNA sequences in representatives of three Fagaceae genera

(2012) Sofia Alves et al.   GENOME

Reference Gene Selection for Quantitative Real-time PCR Normalization in Quercus suber

(2012) Liliana Marum et al.   PLoS One

Poplar stems show opposite epigenetic patterns during winter dormancy and vegetative growth

(2012) Daniel Conde et al.   TREES-STRUCTURE AND FUNCTION

Suberin Goes Genomics: Use of a Short Living Plant to Investigate a Long Lasting Polymer

(2012) Rochus Benni Franke et al.   Frontiers in Plant Science

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

Histone deacetylase HD2 interacts with ERF1 and is involved in longan fruit senescence

(2011) Jian-fei Kuang et al.   JOURNAL OF EXPERIMENTAL BOTANY

A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy

(2011) Jian Zheng et al.   NEW PHYTOLOGIST

Corepressor MMTR/DMAP1 is an intrinsic negative regulator of CAK kinase to regulate cell cycle progression

(2010) June Ho Shin et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Arabidopsis DNA methyltransferase AtDNMT2 associates with histone deacetylase AtHD2s activity

(2010) Yuan Song et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Global Levels of Specific Histone Modifications and an Epigenetic Gene Signature Predict Prostate Cancer Progression and Development

(2010) T. Bianco-Miotto et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

DNA Methyltransferase 1-associated Protein (DMAP1) Is a Co-repressor That Stimulates DNA Methylation Globally and Locally at Sites of Double Strand Break Repair

(2010) Gun E. Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Arabidopsis SET DOMAIN GROUP2Is Required for H3K4 Trimethylation and Is Crucial for Both Sporophyte and Gametophyte Development

(2010) Alexandre Berr et al.   PLANT CELL

SET DOMAIN GROUP2 is the major histone H3 lysine 4 trimethyltransferase in Arabidopsis

(2010) L. Guo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dmap1 plays an essential role in the maintenance of genome integrity through the DNA repair process

(2009) Masamitsu Negishi et al.   GENES TO CELLS

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

Strain Mechanosensing Quantitatively Controls Diameter Growth and PtaZFP2 Gene Expression in Poplar

(2009) C. Coutand et al.   PLANT PHYSIOLOGY

Chromosome and DNA methylation dynamics during meiosis in the autotetraploid Arabidopsis arenosa

(2009) Ana Carvalho et al.   SEXUAL PLANT REPRODUCTION

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

Combinatorial patterns of histone acetylations and methylations in the human genome

(2008) Zhibin Wang et al.   NATURE GENETICS

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

(2008) Yana V. Bernatavichute et al.   PLoS One

Interplay of Ribosomal DNA Loci in Nucleolar Dominance: Dominant NORs Are Up-Regulated by Chromatin Dynamics in the Wheat-Rye System

(2008) Manuela Silva et al.   PLoS One

Epigenetic marks in the mature pollen of Quercus suber L. (Fagaceae)

(2008) Teresa Ribeiro et al.   SEXUAL PLANT REPRODUCTION