A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing

OakContigDF159.1, a reference library for studying differential gene expression inQuercus roburduring controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis

(2013) Mika T. Tarkka et al.   NEW PHYTOLOGIST

Molecular characterization of Quercus suber MYB1, a transcription factor up-regulated in cork tissues

(2012) Tânia Almeida et al.   JOURNAL OF PLANT PHYSIOLOGY

Reference Gene Selection for Quantitative Real-time PCR Normalization in Quercus suber

(2012) Liliana Marum et al.   PLoS One

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

(2011) Patricia Faivre Rampant et al.   BMC GENOMICS

Temperature stress effects in Quercus suber leaf metabolism

(2011) Inês Chaves et al.   JOURNAL OF PLANT PHYSIOLOGY

SeqTrim: a high-throughput pipeline for preprocessing any type of sequence reads

(2010) Juan Falgueras et al.   BMC BIOINFORMATICS

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

(2010) Beifang Niu et al.   BMC BIOINFORMATICS

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

(2010) Saneyoshi Ueno et al.   BMC GENOMICS

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study

(2010) Jérôme Durand et al.   BMC GENOMICS

Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis

(2010) Tim van Zutphen et al.   BMC GENOMICS

Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes

(2010) Ruth E Timme et al.   BMC PLANT BIOLOGY

Drought-induced photosynthetic inhibition and autumn recovery in two Mediterranean oak species (Quercus ilex and Quercus suber)

(2010) M. Vaz et al.   TREE PHYSIOLOGY

Next generation transcriptomes for next generation genomes using est2assembly

(2009) Alexie Papanicolaou et al.   BMC BIOINFORMATICS

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

(2009) Abdelali Barakat et al.   BMC PLANT BIOLOGY