Bioinformatics tools for cancer metabolomics

So what have data standards ever done for us? The view from metabolomics

(2012) Julian L Griffin et al.   Genome Medicine

Combining metabolic fingerprinting and footprinting to understand the phenotypic response of HPV16 E6 expressing cervical carcinoma cells exposed to the HIV anti-viral drug lopinavir

(2010) Dong-Hyun Kim et al.   ANALYST

Evaluation of Full-ResolutionJ-Resolved1H NMR Projections of Biofluids for Metabonomics Information Retrieval and Biomarker Identification

(2010) Judith M. Fonville et al.   ANALYTICAL CHEMISTRY

The promise of bone cancer proteomics

(2010) Stephanie Byrum et al.   Annals of the New York Academy of Sciences

Metabolic network adaptations in cancer as targets for novel therapies: Figure 1

(2010) Marta Cascante et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Merging transcriptomics and metabolomics - advances in breast cancer profiling

(2010) Eldrid Borgan et al.   BMC CANCER

Can metabolomics in addition to genomics add to prognostic and predictive information in breast cancer?

(2010) Anthony Howell   BMC Medicine

Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer

(2010) Raj Chari et al.   CANCER AND METASTASIS REVIEWS

Early Detection of Recurrent Breast Cancer Using Metabolite Profiling

(2010) V. M. Asiago et al.   CANCER RESEARCH

A Message from the New Editor-in-Chief

(2010) G. C. Prendergast   CANCER RESEARCH

Breast cancer genomes—form and function

(2010) James Korkola et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Proteomics in prostate cancer biomarker discovery

(2010) Samantha ET Larkin et al.   Expert Review of Proteomics

Metabolomics and detection of colorectal cancer in humans: a systematic review

(2010) Haili Wang et al.   Future Oncology

Improving liquid chromatography–tandem mass spectrometry determinations by modifying noise frequency spectrum between two consecutive wavelet-based low-pass filtering procedures

(2010) Hsiao-Ping Chen et al.   JOURNAL OF CHROMATOGRAPHY A

Urinary Metabonomic Study on Colorectal Cancer

(2010) Yunping Qiu et al.   JOURNAL OF PROTEOME RESEARCH

Urinary metabonomic study of lung cancer by a fully automatic hyphenated hydrophilic interaction/RPLC-MS system

(2010) Qin Yang et al.   JOURNAL OF SEPARATION SCIENCE

Serum metabolome analysis by 1H-NMR reveals differences between chronic lymphocytic leukaemia molecular subgroups

(2010) D A MacIntyre et al.   LEUKEMIA

Quantitative two-dimensional HRMAS 1H-NMR spectroscopy-based metabolite profiling of human cancer cell lines and response to chemotherapy

(2010) Mathilde Bayet-Robert et al.   MAGNETIC RESONANCE IN MEDICINE

High-resolution magic-angle-spinning NMR spectroscopy for metabolic profiling of intact tissues

(2010) Olaf Beckonert et al.   Nature Protocols

Global metabolic profiling procedures for urine using UPLC–MS

(2010) Elizabeth J Want et al.   Nature Protocols

Comprehensive mass spectrometry based metabolic profiling of blood plasma reveals potent discriminatory classifiers of pancreatic cancer

(2010) Shiro Urayama et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

RRLC-MS/MS-based metabonomics combined with in-depth analysis of metabolic correlation network: finding potential biomarkers for breast cancer

(2009) Yanhua Chen et al.   ANALYST

Chemometrics in metabolomics—A review in human disease diagnosis

(2009) Rasmus Madsen et al.   ANALYTICA CHIMICA ACTA

Use of nuclear magnetic resonance-based metabolomics in detecting drug resistance in cancer

(2009) Andrea L Merz et al.   Biomarkers in Medicine

NMR metabolic analysis of samples using fuzzy K-means clustering

(2009) Miroslava Čuperlović-Culf et al.   MAGNETIC RESONANCE IN CHEMISTRY

Fast targeted multidimensional NMR metabolomics of colorectal cancer

(2009) C. Ludwig et al.   MAGNETIC RESONANCE IN CHEMISTRY

Capillary electrophoresis mass spectrometry-based saliva metabolomics identified oral, breast and pancreatic cancer-specific profiles

(2009) Masahiro Sugimoto et al.   Metabolomics

Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research

(2009) Augustin Scalbert et al.   Metabolomics

Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression

(2009) Arun Sreekumar et al.   NATURE

Application of NMR in plant metabolomics: techniques, problems and prospects

(2009) Jan Schripsema   PHYTOCHEMICAL ANALYSIS

Two-dimensional J-resolved NMR spectroscopy: review of a key methodology in the metabolomics toolbox

(2009) Christian Ludwig et al.   PHYTOCHEMICAL ANALYSIS

XCMS2: Processing Tandem Mass Spectrometry Data for Metabolite Identification and Structural Characterization

(2008) H. P. Benton et al.   ANALYTICAL CHEMISTRY

TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments

(2008) Alexander Luedemann et al.   BIOINFORMATICS