Private Selective Sweeps Identified from Next-Generation Pool-Sequencing Reveal Convergent Pathways under Selection in Two Inbred Schistosoma mansoni Strains

Evolutionary histories of expanded peptidase families in Schistosoma mansoni

(2014) Larissa Lopes Silva et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples

(2013) Simon Boitard et al.   Molecular Ecology Resources

The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite’s biology

(2012) Larissa Silva et al.   BMC GENOMICS

Combination of de novo assembly of massive sequencing reads with classical repeat prediction improves identification of repetitive sequences in Schistosoma mansoni

(2012) Julie M.J. Lepesant et al.   EXPERIMENTAL PARASITOLOGY

Diverse biological functions of the SPARC family of proteins

(2012) Amy D. Bradshaw   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Inferring Population Histories Using Genome-Wide Allele Frequency Data

(2012) Mathieu Gautier et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting Selective Sweeps from Pooled Next-Generation Sequencing Samples

(2012) S. Boitard et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic polymorphisms of Echinococcus granulosus sensu stricto in the Middle East

(2012) Tetsuya Yanagida et al.   PARASITOLOGY INTERNATIONAL

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene duplication as a mechanism of genomic adaptation to a changing environment

(2012) F. A. Kondrashov   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

(2012) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

Genomic diversity of the human intestinal parasite Entamoeba histolytica

(2012) Gareth D Weedall et al.   GENOME BIOLOGY

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Compatibility polymorphism in snail/schistosome interactions: From field to theory to molecular mechanisms

(2011) G. Mitta et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Statistical methods for detecting natural selection from genomic data

(2011) Yoshiyuki Suzuki   GENES & GENETIC SYSTEMS

Evidence for evolutionary convergence at MHC in two broadly distributed mesocarnivores

(2011) Vythegi Srithayakumar et al.   IMMUNOGENETICS

Towards an understanding of the epigenetics of schistosomes: a comparative epigenomic study

(2011) Julie Mireille Joé Lepesant et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

(2011) A. Branca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

Follow-up of the genetic diversity and snail infectivity of a Schistosoma mansoni strain from field to laboratory

(2010) Nicolas Bech et al.   INFECTION GENETICS AND EVOLUTION

Epigenetic and phenotypic variability in populations of Schistosoma mansoni- a possible kick-off for adaptive host/parasite evolution

(2010) C. Cosseau et al.   OIKOS

Even small SNP clusters are non-randomly distributed: is this evidence of mutational non-independence?

(2010) W. Amos   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

Parasites and poverty: The case of schistosomiasis

(2009) Charles H. King   ACTA TROPICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

(2009) Chao Xie et al.   BMC BIOINFORMATICS

Bioinformatic analysis of the neprilysin (M13) family of peptidases reveals complex evolutionary and functional relationships

(2009) Nicholas D Bland et al.   BMC EVOLUTIONARY BIOLOGY

A whole genome Bayesian scan for adaptive genetic divergence in West African cattle

(2009) Mathieu Gautier et al.   BMC GENOMICS

Detecting Selective Sweeps: A New Approach Based on Hidden Markov Models

(2009) S. Boitard et al.   GENETICS

The genome of the blood fluke Schistosoma mansoni

(2009) Matthew Berriman et al.   NATURE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A genome-wide signature of positive selection in ancient and recent invasive expansions of the honey bee Apis mellifera

(2008) A. Zayed et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Controlled Chaos of Polymorphic Mucins in a Metazoan Parasite (Schistosoma mansoni) Interacting with Its Invertebrate Host (Biomphalaria glabrata)

(2008) Emmanuel Roger et al.   PLoS Neglected Tropical Diseases

Molecular determinants of compatibility polymorphism in the Biomphalaria glabrata/Schistosoma mansoni model: New candidates identified by a global comparative proteomics approach

(2007) Emmanuel Roger et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Expression analysis of highly polymorphic mucin proteins (Sm PoMuc) from the parasite Schistosoma mansoni

(2007) Emmanuel Roger et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY