FamSeq: A Variant Calling Program for Family-Based Sequencing Data Using Graphics Processing Units
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
FamSeq: A Variant Calling Program for Family-Based Sequencing Data Using Graphics Processing Units
Authors
Keywords
-
Journal
PLoS Computational Biology
Volume 10, Issue 10, Pages e1003880
Publisher
Public Library of Science (PLoS)
Online
2014-10-31
DOI
10.1371/journal.pcbi.1003880
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- DeNovoGear: de novo indel and point mutation discovery and phasing
- (2013) Avinash Ramu et al. NATURE METHODS
- Rare variant detection using family-based sequencing analysis
- (2013) G. Peng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Improving sequence-based genotype calls with linkage disequilibrium and pedigree information
- (2012) Baiyu Zhou et al. Annals of Applied Statistics
- GPUmotif: An Ultra-Fast and Energy-Efficient Motif Analysis Program Using Graphics Processing Units
- (2012) Pooya Zandevakili et al. PLoS One
- A Likelihood-Based Framework for Variant Calling and De Novo Mutation Detection in Families
- (2012) Bingshan Li et al. PLoS Genetics
- Chromosomal Haplotypes by Genetic Phasing of Human Families
- (2011) Jared C. Roach et al. AMERICAN JOURNAL OF HUMAN GENETICS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Low-coverage sequencing: Implications for design of complex trait association studies
- (2011) Y. Li et al. GENOME RESEARCH
- Variation in genome-wide mutation rates within and between human families
- (2011) Donald F Conrad et al. NATURE GENETICS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Genotype and SNP calling from next-generation sequencing data
- (2011) Rasmus Nielsen et al. NATURE REVIEWS GENETICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
- (2010) J. C. Roach et al. SCIENCE
- The gputools package enables GPU computing in R
- (2009) J. Buckner et al. BIOINFORMATICS
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
- (2008) Curtis P Van Tassell et al. NATURE METHODS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now