GPUmotif: An Ultra-Fast and Energy-Efficient Motif Analysis Program Using Graphics Processing Units

CPU-GPU hybrid accelerating the Zuker algorithm for RNA secondary structure prediction applications

(2012) Guoqing Lei et al.   BMC GENOMICS

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

permGPU: Using graphics processing units in RNA microarray association studies

(2010) Ivo D Shterev et al.   BMC BIOINFORMATICS

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data

(2010) Zhaohui S Qin et al.   BMC BIOINFORMATICS

An Integrated Network of Androgen Receptor, Polycomb, and TMPRSS2-ERG Gene Fusions in Prostate Cancer Progression

(2010) Jindan Yu et al.   CANCER CELL

EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units

(2010) Tony Kam-Thong et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

On the detection and refinement of transcription factor binding sites using ChIP-Seq data

(2010) Ming Hu et al.   NUCLEIC ACIDS RESEARCH

Many-core algorithms for statistical phylogenetics

(2009) M. A. Suchard et al.   BIOINFORMATICS

The gputools package enables GPU computing in R

(2009) J. Buckner et al.   BIOINFORMATICS